Gloeomargarita lithophora: GlitD10_1647
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Entry
GlitD10_1647 CDS
T09871
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
glt
Gloeomargarita lithophora
Pathway
glt03030
DNA replication
glt03430
Mismatch repair
glt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
glt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GlitD10_1647 (dnaE)
03430 Mismatch repair
GlitD10_1647 (dnaE)
03440 Homologous recombination
GlitD10_1647 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
glt03032
]
GlitD10_1647 (dnaE)
03400 DNA repair and recombination proteins [BR:
glt03400
]
GlitD10_1647 (dnaE)
Enzymes [BR:
glt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GlitD10_1647 (dnaE)
DNA replication proteins [BR:
glt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GlitD10_1647 (dnaE)
DNA repair and recombination proteins [BR:
glt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GlitD10_1647 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
APB33971
UniProt:
A0A1J0ADI4
LinkDB
All DBs
Position
1680294..1683776
Genome browser
AA seq
1160 aa
AA seq
DB search
MSFVGLHVHTEYSLLDGASQIPQLVERAVALNMPAIAITDHGVMYGAIELIKQCRERGIK
PIIGNEMYVINGDITKQERRPRYHQIVLAKNTEGYKNLVKLTTISHLQGVQGKGIFSRPC
INKELLAEYRQGLIVTSACLGGEIPQKILQGKYQEAREVAQWYQKNFGDDFYLEIQDHGS
PEDRMVNVEIVTIAQELGIKYIATNDSHYISCYDVEAHDALLCIQTGKLITETKRLRYSG
TEYLKSGQEMSQLFRDHLEDEIIQTALKTTLEIAHKIEPYNILGESRLPEYDVPVGHTVD
TYLEQMAWQGLAERLGLKRDQIPGNYKDRLIYELRIIQQRGFSGYFLVVWDYIKYARDHQ
IPVGPGRGSAAGSLVAYVLGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIDNRDSII
EYVTQHYGDDRVAQIITFNRMTSKAVLKDVARVLEGITHREADQMAKYIPVFRGKPARLG
EMIGEETPTPEFKAKYDQDDRVRHWLDLAMRIEGMNKTFGVHAAGVVIAPQPLDELVPLQ
RNNDGAVITQYPMEDIESLGLLKMDFLGLRNLTLIQRAIKLIQKNHGIQIDLDHLPLDDP
KTYQLLGQGELEGIFQLESTGMRQIVRDLKPSNIEDVSSILALYRPGPLDAGLIPKFIDR
KHGREKVDYSHPMLGQILQETYGLIIYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKPEE
MEKQRQVFLEGSAKNGIPKPVALDLFEQMLLFAEYCFNKSHSTAYAYVTYQTAYLKAHFP
VEYMAALLSSQIGNQDKMQRYIATCQTMNIEVEPPDINRSDTDFTPLKNNKNILFGLTAV
RNVGQGAVEHILQVRQTAKFQSLADVCDRVDTGVVNRRALEALIQSGALDKLHHNRHQMM
LDLELLLDWSHSRAKDREMGQADIFSLLNGSGQETALTTAPKAPPVDDYSSPEKLKLEKE
LLGFYISDHPLKPLMQRAQILAPISLGQLERAPENRPVTALALITQIKPITTKKGDRMAV
VTLEDLSGSCEAVAFPSVFAQIGDFLIPEQPLVVWGRLDQRDEQMQLILEDVQFAQEVQI
LSVTLTVAQAGDMQMQAQLRETLKPWCGETAKVPVVATIAHPLRQLQVRFGPQFRVQDGT
ATAQALTQAGFAAQSQALVR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgttggtttgcacgtccatacagaatacagtttgctggatggtgccagccaa
attccccaacttgtcgagcgggcggtagccctgaatatgcctgccatcgccatcaccgat
cacggggtcatgtacggggcaattgaactgattaaacaatgccgggaacggggaattaag
ccaattattggcaacgaaatgtatgtgatcaatggggatattaccaaacaggaacgtcgc
ccccgttatcaccaaattgtcctcgccaaaaataccgaaggttataaaaatctagtcaaa
cttaccaccatttctcacttacaaggagtgcaggggaaaggcattttttcccgtccctgt
atcaacaaagaattacttgcggaatatcgccagggcttaatcgtcaccagtgcctgtttg
gggggggaaattccccaaaaaatcctccagggaaaataccaagaagcccgggaagttgcc
caatggtatcaaaaaaactttggggatgatttctatttggaaatccaagaccacggctcc
ccggaagaccggatggtaaatgtggaaattgttaccatcgcccaagaactggggattaaa
tatattgccaccaacgattcccactatatttcctgttacgatgtggaagcccacgatgca
cttttgtgcattcaaactggcaaattgatcaccgaaacgaaacgcctgcgttatagtggc
accgaatacttgaaatccggccaggaaatgagccaattatttcgggatcacttggaggat
gaaattattcaaactgccctgaaaactaccctggaaatcgctcacaaaatcgaaccctat
aacattttaggagaatcccgcttgccggaatacgacgttccggtgggtcatacggtggat
acctatttagaacaaatggcttggcagggtttggcagagcggttagggttaaaacgggat
cagattcccggaaattataaagaccgattaatttatgaacttagaatcattcaacagcgg
ggattttccggctatttcctcgtggtttgggattacataaaatatgcccgtgaccatcaa
attcccgttgggccagggcggggttcggcagcgggttctttagtagcttatgtattagga
attaccaatattgacccggtacatcatggccttttatttgaacgatttttgaatcctgaa
cgcaaatctatgccggatattgacacggatttttgcattgataaccgagatagcatcatt
gaatacgtcacccagcattatggggatgaccgggtggcgcaaattattacctttaaccgc
atgacatccaaggcggttctcaaggatgtggcacgggttttggagggcattacccatcgg
gaagcggatcaaatggccaaatatattcccgtgtttcggggcaaaccggcacgcctgggg
gaaatgattggcgaagaaacccccacgcctgaattcaaagccaagtatgaccaggatgat
cgggtgcgtcactggctggatttggccatgcggattgaggggatgaataaaacttttggt
gtccatgccgctggagtggtgattgcaccccaacctttggatgaactggtacccctacaa
cggaataatgacggagcggtgatcacccaatatccgatggaagatattgaatctttaggt
ttattaaaaatggatttcttgggtttaagaaatctcaccctgattcaacgggcaattaaa
ctgattcagaaaaatcatggtattcaaattgacctggatcatctacccttagatgaccca
aagacctatcaactattaggccagggagaattagaaggtattttccaattagaatcaacc
gggatgcggcaaattgtccgggatttgaaaccctccaatatcgaggatgtttcttctatt
ttagccctgtatcgtccggggcctttggatgcgggtttgattcctaaatttattgaccgc
aaacatgggcgggaaaaggtagattattcccatcccatgctaggacaaattctccaggaa
acctacggtttaattatttaccaagaacagattatgaaaattgcccaggacatggccgga
tattccttaggacaagcggatttgctcagacgggcgatggggaaaaagaaacccgaagag
atggaaaaacaacggcaggtatttttagaagggtcggccaaaaatggtattcccaaacct
gttgctttagacctgtttgaacagatgcttttattcgccgagtattgttttaacaaatcc
cattccacggcctatgcctatgtcacttatcaaacggcttatttgaaagcccattttccg
gtggaatatatggcggctttattgtcttctcaaattgggaatcaagataaaatgcaacgc
tatattgctacctgtcaaacgatgaatattgaagtagagcctccagatattaaccgctcg
gatacggattttactccccttaaaaataacaagaatatcctatttggtttaacagcggtg
cggaatgtgggtcagggggcggtagaacatattttacaggtgcgacaaacggctaaattt
caatccctagccgatgtctgtgaccgggtggatactggtgtggtgaatcgccgggcattg
gaggctttgatccaatcgggagctttagataaattgcaccataatcgccaccaaatgatg
ctggatttggaactgcttttagattggtcgcatagccgtgccaaagaccgagaaatgggg
caggcggatatttttagtttacttaatggtagtgggcaggaaacggctttgacaacagca
cctaaagctccgcccgtggatgattattcgtctccagaaaagttgaaattagaaaaggaa
ttgctggggttttatatttccgatcacccattgaaaccactcatgcaacgggcacaaatt
ttagctcccattagtttaggacaattggaacgggcgccagaaaatcgtccggtcacggct
ttggctctcattacccaaatcaaaccgattacgaccaaaaaaggcgaccggatggcggtg
gtgaccttggaagatttaagtggcagttgtgaagcggtggcctttccgagtgtattcgcc
cagattggggattttttaataccggagcaacccttagtagtgtggggtcgcctggatcag
cgggatgaacaaatgcaactgattttggaagatgtgcagttcgcccaggaggtgcaaatt
ctcagcgtcaccttgaccgtggcgcaagcgggggatatgcagatgcaagcccaactgcgg
gaaaccctgaaaccctggtgcggggaaacggcgaaagtcccagtggtagccactatcgcc
catcccctacggcaactccaggtacgatttggcccccaatttcgggtgcaagatgggact
gcaaccgctcaggcattgacccaggcgggttttgcggcgcaatctcaagccctggtgcgg
tga
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