Gloeomargarita lithophora: GlitD10_2404
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Entry
GlitD10_2404 CDS
T09871
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
glt
Gloeomargarita lithophora
Brite
KEGG Orthology (KO) [BR:
glt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
glt03016
]
GlitD10_2404 (rnb)
Enzymes [BR:
glt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GlitD10_2404 (rnb)
Transfer RNA biogenesis [BR:
glt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GlitD10_2404 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
APB34738
UniProt:
A0A1J0AFM8
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All DBs
Position
complement(2458478..2460469)
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AA seq
663 aa
AA seq
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MDKGTLIEFHTDGDTRLGVIQRPDGKKNWVASDAQGRNYSLHPRQISFTVAGQTYLSEDI
PDFVQAAHPYQDPEALELAWELLSPDHRLTNPQELAHLIFSQSDPPICYAVHRLLSEDRI
FFKQKGEYYEPRSPQQVQDIRHQLEKEAQKQAEASTFYSKIERALQGENLTWSAKERHLL
EQLEQFVILEGQESRLVAELLSQLARPVTPTGAQELLVRLGWWHPHENLALRRSSLPTTF
PPSVVEAATMRVEDPHTDPDAPWRVDLTALKVYTIDDISTKEIDDGLSWECLADGDERLW
IHIADPGRWLTPGDILDQEARRRSTSVYLPTGVIPMFPEGLATGPMSLQQGQTCCALSFG
VILHPSGEIRDFQITASWVRPTYRLTYEDVDELLQLQVEREQELLHLSQWAQRRLDWRLA
QGAIQIQMPEADIKVTDDQVEVQVQNHSPARFLVAEMMILAGEVTARYAQSAGLAMPFRS
QPQPELPREEELLQLPGGPVRTCAIRRCLTKSEVSTTPGRHASLGLSAYVQATSPIRRYG
DLLAHWQLKAHLRGEAPVFAAAELQSILQTVTATTQEASLVERQTNRYWSLEYLRRHGEG
VWTGLILRWLREDSDLVLVLLEELGLELGMRVQRAVKLGEQIQVQITHVDPYRDVIHLRE
VSR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagggcaccctgattgaatttcacaccgatggtgatacccgcctgggggtgatc
caacgcccggacggcaaaaaaaactgggtcgccagcgatgcccaggggcgcaactatagc
ctgcacccccggcaaattagcttcaccgtggcggggcagacgtacctgagcgaggatatt
cccgactttgtgcaggccgcccatccctaccaagacccggaagccctagaattagcctgg
gaattgctcagccccgaccaccggctcaccaacccccaggaactggcgcatcttatcttc
agccaatccgacccacccatttgctatgcagtccaccgcctgctgagcgaagaccggatt
tttttcaaacaaaaaggggaatactacgaaccccgttccccccagcaggtgcaagacatt
cgccatcaactggaaaaagaagcccaaaagcaagcagaagctagtacattttacagcaaa
attgagcgggcactccagggagaaaacctcacttggtcagccaaagaacggcatttacta
gaacaactggagcaatttgttatcctggaggggcaggagtcccgcttggtagcagaatta
ctcagccaactggctcgtccggttacgccaacgggggcgcaggaattgctagtacgtttg
ggctggtggcatccccacgaaaacctggctctgcggcggagttccctgcccacgactttt
cccccatccgttgtggaggcggctaccatgcgtgttgaagacccgcacaccgacccggat
gccccttggcgagtggatttaaccgccctcaaggtttatacgattgatgatattagcacc
aaagaaattgatgacggcctcagttgggagtgcttagccgatggggacgagcggttgtgg
attcatatcgccgaccctggacgctggttgacccctggggatattttggatcaagaagcc
cgcaggcgcagtacgagtgtctatttgcccaccggggtgattcccatgttcccggagggg
ttggcgaccgggccgatgagcctacagcaggggcaaacctgttgcgcccttagttttggg
gtgattttgcacccgtccggggaaattcgggattttcagatcaccgccagttgggtgcgc
cccacctaccggcttacctatgaggatgttgacgaattactgcaattgcaggtcgagcgg
gaacaggaactgctgcacctgtcccaatgggcacaacggcggttagattggcggttggcg
cagggggcgatccagattcaaatgccggaagcggacatcaaagtcaccgacgaccaggtg
gaggtgcaggtgcaaaaccattccccggcgcggtttttggtggcggaaatgatgatcctg
gcgggggaagtcaccgcccgctatgcccaaagtgccggtttagccatgccctttcgttcc
caaccccagccggaattgccccgggaagaggaattgctccaactccccggcgggccggtg
cgtacctgtgcgattcgccgttgtttgaccaaaagcgaggtgagtaccacccccggtcgc
catgccagtttggggttatcggcttatgtgcaggccacctccccgattcgccgctacggg
gatttgctcgcccattggcaactcaaagcccacctgcggggggaggcaccggtgtttgcc
gccgccgagttgcaaagcattctccaaaccgtgaccgccaccacccaggaagccagcttg
gtggagcggcaaaccaatcgctactggagcctggaatacctgcgccgccacggggaaggg
gtttggacggggctgatactgcgctggttgcgcgaagatagcgacctggtgctggtactg
ttggaagaactgggtttggaactgggaatgcgggtgcaaagggcggttaaattgggggaa
caaattcaggtgcaaattacccacgtggacccctaccgggatgtgatccacctgcgggaa
gtgagccgctaa
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