Gloeomargarita lithophora: GlitD10_2867
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Entry
GlitD10_2867 CDS
T09871
Symbol
rne
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
glt
Gloeomargarita lithophora
Pathway
glt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GlitD10_2867 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glt03019
]
GlitD10_2867 (rne)
03009 Ribosome biogenesis [BR:
glt03009
]
GlitD10_2867 (rne)
Enzymes [BR:
glt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GlitD10_2867 (rne)
Messenger RNA biogenesis [BR:
glt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GlitD10_2867 (rne)
Ribosome biogenesis [BR:
glt03009
]
Prokaryotic type
rRNA processing factors
GlitD10_2867 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF5817_CT
Motif
Other DBs
NCBI-ProteinID:
APB35211
UniProt:
A0A1J0AH42
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All DBs
Position
complement(2915973..2917967)
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AA seq
664 aa
AA seq
DB search
MSKQIILAEQHRIAAVFADDQIQELVVATGNLQVGDVFLGVVENVLPGIDAAFVNIGDPE
RNGFIHVSDLGPLRLKRTAGAITELLMPQQKVVVQVMKEPTGNKGPRLTGNITLPGRYLV
LMPYGRGVFLSQRIRNENERHRLRALAVLIKPSQMGLLVRTEAEGVSEEAVMEDLENLKR
QWEKVQRDGAVVRSPGLLNRDDDFVQRVLRDFYSAQVNRIVTDTADGLKRVKQQLSNWGG
GKPPVGLLVDHHREPTPILEYFRVNAAIREALKPRVDLPKGGYIVIEPTEALTVIDVNSG
SFTRSATARETVLWTNYEAATEIARQLRLRNIGGVIIVDFIDMEDRRDQLQLLEHFSKAL
KTDKARPQIIHLSDLGLIELTRKRQGQNIYELFGQTCPTCNGLGHLARLPGQIGGENTVP
APARMVIGERSENLEDLGFAASPNPDLGFATPLYPMTPLGGNERNSPNRRRHRRYEKPTP
RSEQELPPFATPPMPSPVSNGSNGDNNSNDSNGSNSGREEAPDQQTLRRRPVKPAPTPAQ
VVMVGMTPAEQTVYAEMGLSPLLLTGQNHLQDVMVAVCLPEEVPVSTQTELPMTFAAEAP
PMIETPPMIDVLPITDILPVAAPPTPAVAPAIAVAPEPVESTAPDTRRRRRRSSPASTPE
PITE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacaaattattttggcagagcaacatcgcatcgccgccgtgtttgccgatgac
cagattcaagaactggtggtggctaccggcaatttgcaggtgggggatgtgtttttgggg
gtggtggaaaatgtactgccggggattgatgccgcctttgtcaatattggcgacccggaa
cgcaatgggtttatccatgtgtcggacctggggcctttgcggttgaagcgcaccgccggg
gcaattacggaattgctcatgccccagcaaaaggtggtggtgcaggtgatgaaggagcca
acggggaataaaggcccccgcttgaccggcaacattaccctgccggggcggtatctggtt
ttgatgccctacggtcggggggtgtttctctcccagcggattcgcaatgaaaatgaacgc
caccggttgcgggcgttggccgtgctaattaaaccctcccagatggggctgctggtgcgg
accgaggcggaaggggtgagtgaagaggcggtgatggaggatttggaaaacctgaaacgc
cagtgggaaaaggtacaacgggatggggcggtggtgcgttcgccaggtttgctgaatcgg
gatgatgattttgtgcagagggtactgcgggatttttacagtgcccaggtgaatcgcatc
gtcaccgataccgccgatggcctcaaacgggttaagcaacaactcagcaattggggtggg
ggcaaaccgccggtggggttactcgtggatcaccatcgggaaccgactccgattttggag
tattttcgggtaaatgcggccattcgggaagccctcaaaccccgggtggatttgcccaag
gggggctatatcgtcatcgaacccacggaagccctgacggtgattgatgtcaactcgggt
tcctttacccgctcagcaacggcgagggaaacggtgttgtggaccaattacgaagcggcg
acggagattgctcggcaattgcgattacgcaatatcggcggggtgatcatcgtggacttc
attgatatggaagaccggcgggatcaactgcaactgctggagcatttcagtaaagcccta
aaaaccgacaaagcccgcccccagattatccatctttccgatttggggttgatcgaactg
acccgcaaacgccaggggcaaaatatctacgaactcttcggccagacctgccccacctgc
aatggcctggggcatttggcgcggttacccggtcaaattggtggcgagaatactgtcccg
gcgcccgcccggatggtgatcggggaacgctcggaaaaccttgaggatttgggctttgcg
gccagccccaacccggatttgggctttgccacccccttgtatccgatgacacccttgggg
ggaaatgaacgcaatagtcccaaccgtcgtcgtcatcgccgttacgaaaaacccaccccc
cggagcgaacaggaactgccccccttcgccaccccccccatgcccagtccggtgagtaac
gggagcaatggcgataataacagtaatgacagtaatggaagtaacagcgggcgggaggaa
gcccccgaccagcagaccctgcgccgtcgtccggtgaaaccggcacctacccccgcccag
gtggtcatggtgggaatgacccccgccgaacaaacggtgtatgcggaaatggggctttcc
cctttgttattgacgggtcagaaccatcttcaggatgtgatggtggcggtgtgtttaccg
gaggaagttcccgtttccacccaaacggaactgcccatgaccttcgccgccgaagcaccg
ccaatgatagaaacgccgccaatgatagacgtactcccaataacagacatactgccagta
gcggcaccacccaccccagcggttgctccggctatagcggtcgccccggaacccgtggaa
tccaccgccccggatacccgtcgtcgtcgtcgtcgttctagccccgcatccaccccggaa
cccatcaccgagtag
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