Glutamicibacter sp. ZJUTW: F0M17_09165
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Entry
F0M17_09165 CDS
T06225
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
glu
Glutamicibacter sp. ZJUTW
Pathway
glu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0M17_09165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glu03019
]
F0M17_09165
03009 Ribosome biogenesis [BR:
glu03009
]
F0M17_09165
Enzymes [BR:
glu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F0M17_09165
Messenger RNA biogenesis [BR:
glu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0M17_09165
Ribosome biogenesis [BR:
glu03009
]
Prokaryotic type
rRNA processing factors
F0M17_09165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QEP07384
UniProt:
A0A5C2FLM7
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All DBs
Position
complement(1945191..1948028)
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AA seq
945 aa
AA seq
DB search
MTLAELNAAAGVEESPYRWRATRRTQVSTPDSTKRASRQAERRAQAARDTANDAAVELAA
AKHEDAQAQNAEAAEAAEQEAAPVEEANDVDQTGMLLAEHGSSMILNPFAVPETAQAVLA
AAVAKKQEPARRAAASNSAEDADSDDVTSRRRRRRRRGDVDLELEGGSQDDPPNTVTRVR
APRGSIESHSSVNNKVASVRGSTRLEAKRQRRRESRETGRRRQVITEAEFLARRESVERK
MIVRQREDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGR
NAVLYAGEVNWDVAALEGAPRRIENALKAGDSVLVQVTKDPVGHKGARLTSQISLPGRYL
VYVPGGSMTGISRKLPDVERQRLKKILKDHLPENAGVIVRTAAEGASEEELTNDINRLRA
QWEGIEEQANSTKTLAPELLYSEPDLTIKVVRDVFNEDFTKLIVSGEHAWDTIEAYVMYV
APDLMGRLEKWEAEEDIFANFRVDEQIAKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGK
FTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECL
GRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEECEHCAGAGVITHDEPVESRKSFNS
HGESHGKKFNDKPSRNSRRRRGGEKDEQKPVEKQDQAAGEKDEATRNALASIAAASHLDG
PADNAVSIEGEQIPVTKSVVPAQATAAPAQAAEASVTLEALEAALPGKEESSEEHDGSRK
PRRRSRSRGRNRNQAEESASTNEDAQASQEQQAAPEPVAAPKSEEQPRKRSRRASRPQES
AQQDQPVLTGLAMPAASAPAAATASASAPAAATATPQISTKPKRRSRRATSVQGDATAEV
LVAEVSAATGSVVQMDASGSKKEKPAEPAGNPVMLGVGVPVRELK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggccgaactcaatgccgctgccggtgtcgaggaaagcccataccgctggcgg
gccacccgccgcacccaggtttccacgcctgattccaccaagcgggccagccgccaagca
gaacgccgtgcccaggcggcacgcgataccgccaatgacgcggccgtcgagcttgccgca
gccaagcatgaagacgcacaggcgcagaacgccgaagcagctgaagccgccgagcaggaa
gctgccccggtggaagaggcgaacgacgttgaccagaccggcatgctgctggccgaacac
ggcagcagcatgatcctcaatccgtttgccgtgccggaaaccgcccaggctgtgctggcc
gcagccgtcgcgaagaagcaggaacctgcccgccgtgccgctgcctcgaattccgctgaa
gacgccgattcagacgacgtgacctcgcgtcgccgtcgccgccgtcgccgtggcgacgtg
gatctggagctcgaaggcggctcgcaggatgatccgccgaacaccgtcacccgcgtacgt
gctccgcgtggaagcatcgagagccacagctcggtcaacaacaaggtcgcctcggtgcgc
ggttccacccgtctggaagccaagcgccagcgccgccgcgaatcgcgcgaaaccggacgc
cgccgccaggtgattaccgaggccgagttcctggcccgccgcgagtccgtcgagcgcaag
atgatcgtgcgccagcgcgaagaccgcatccagattggcgtgctcgaagacggcgtgctc
gcagagcacttcgtctccaagacccagcaggattcgctgatcggcaacgtgtacgtcggc
aaggtgcagaatgtgctgccctccatggaagccgctttcgtggatatcggacgcggccgc
aacgccgtgctgtacgcaggcgaagtcaactgggatgtggcagcgctcgaaggcgcgcca
cgccgcatcgagaacgcattgaaggccggcgactcggtccttgtccaggtcaccaaggac
ccggtaggccacaagggtgcccgcctgaccagccagatctcgctgccgggccgctacctg
gtctacgtgccgggcggttcgatgaccggcatctcgcgcaagctgcccgatgttgagcgc
cagcgcctgaagaagatcctcaaggaccacctgccggaaaacgctggcgtcatcgtgcgc
accgccgccgaaggcgcctccgaggaggagctgaccaacgatatcaaccggctgcgcgcg
cagtgggaaggcatcgaggaacaggcgaactccaccaagaccctggctccggaactgctg
tactcggaaccggacctgaccatcaaggtagtccgcgacgtcttcaacgaggacttcacc
aagctgatcgtctcgggcgagcacgcctgggacaccatcgaggcctatgtcatgtacgtg
gccccggacctgatgggacgcctggagaagtgggaagcagaagaggacatcttcgccaat
ttccgcgtggacgagcagatcgcgaaggcactggaccgcaaggtcttcctgccttcgggc
ggctcgctggtcatcgaccgcaccgaggcgatgactgtcatcgacgtcaacaccggcaag
ttcaccggttcgggcggcaacctcgaagagaccgtgaccaagaacaacttggaagcggcc
gaggaagtcgtgcgccagctgcgcctgcgcgacatcggcggcattatcgtcatcgacttc
atcgacatggtgcttgagtcgaaccgcgacttggtgctgcgccgcctggtcgagtgcctg
ggccgcgaccggaccaagcaccaggtggccgaagtgacctcgctgggcctggtgcagatg
acccgcaagcgcatgggcaccggactgctcgaagtcttcggcgaagagtgcgagcactgc
gctggtgctggcgtcatcacccacgacgagccggtcgaatcgcgcaagtccttcaactcg
catggcgaatcgcatggcaagaagttcaacgacaagccaagccgcaattcccgccgccgt
cgcggcggcgagaaggacgagcagaagccggttgagaagcaggaccaggcagcaggggag
aaagacgaagccacgcgcaacgccctggccagcatcgccgccgcctcgcaccttgacggc
cctgctgataacgcagtgagcatcgagggcgagcagattccggtgacgaagtccgtggtc
cccgcacaggccaccgcggcccctgcgcaggccgccgaggcttcggtgaccctggaggcc
ctggaagccgccttgcctggcaaggaagagtccagcgaagagcacgatggcagccgcaag
ccgcgccgccgttcgcgctcccgcggacgcaaccgcaaccaggccgaggaaagcgcttcg
accaacgaggacgcacaggccagccaggaacagcaagctgctcctgaacctgttgctgcc
ccgaagtccgaagagcagcctcgcaagcgttcgcgccgtgcatcgcgtccgcaggagtcg
gcgcagcaggaccagccggtgcttaccggcctggccatgccagctgccagtgctcctgcc
gctgcaactgcatctgcttccgctccggctgccgccacggcaaccccgcagatttccacg
aagccaaagcgccgcagtcgtcgggccacctcggtccagggcgatgcgacggcagaggtc
ctcgtggcagaggtatccgccgctaccggttcggtagtccagatggatgcctccggttcg
aagaaggaaaaaccagctgaacctgccgggaatccggtcatgctcggtgtgggtgttccg
gtacgcgaactgaaatag
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