Glycomyces sp. TRM65418: K3N28_02955
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Entry
K3N28_02955 CDS
T07425
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gly
Glycomyces sp. TRM65418
Brite
KEGG Orthology (KO) [BR:
gly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gly03016
]
K3N28_02955
Enzymes [BR:
gly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K3N28_02955
Transfer RNA biogenesis [BR:
gly03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K3N28_02955
Prokaryotic type
tRNA splicing ligases
K3N28_02955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QZD56105
LinkDB
All DBs
Position
complement(647431..648618)
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AA seq
395 aa
AA seq
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MSFTDLQSKAAPIRLWGDVDTVEPQALGQLYNIAKLPWVHGVAVMPDVHYGIGATVGSVI
AMRGAVSPAAVGVDIGCGMTAQRTSLTAEDLPDDLGRLRSAIEVAIPVGQAMHKNSVDVR
HLKTGLHGWHEFWSGFDELAQPVARRTEAKTMKQLGTLGGGNHFIEVCLSDDGRVWLMLH
SGSRYVGNALAQHHIEKAKGLPHNADLPDPDLAVFVADTPQMEAYRRDLFWAQEYARRNR
AVMMALLRQVVKKRFPKARFETEVSVHHNYVAEETHDGQDLLVTRKGAIRAGLGDMGIIP
GSMGASSFIVRGLGKGEAYESASHGAGRKMSRNAARKRFTAEDLIAQTEGVECRKDPGVI
DEIPGAYKDIDAVMAAQSDLVEIVARLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcaccgacctccaatcgaaagcggccccgatccgcctgtggggcgacgtcgac
acggtcgagccgcaggcgctcggacagctctacaacatcgcgaagctgccgtgggtgcac
ggcgtggccgtcatgcccgacgtccactacggcatcggcgcgacggtcggctcggtgatc
gccatgcgcggcgcggtgtcgcccgccgcggtcggcgtcgacatcggctgcggcatgacc
gcgcagcggacctcgctgaccgccgaagacctgcccgacgacctcgggcggctccgttcg
gccatcgaggtcgccattccggtcggccaggccatgcacaagaactcggtcgacgtccgc
cacctcaagaccggcctgcacggctggcacgagttctggtccggtttcgacgaactggcg
cagccggtggcccgccggaccgaggcgaagacgatgaagcagctggggaccctgggcgga
ggcaaccacttcatagaagtatgcctatctgacgatgggcgcgtgtggctgatgctgcac
tccggttcccggtacgtcggcaacgccctcgcgcagcaccacatcgagaaggcgaaagga
ctgccgcacaacgcggacctccccgacccggacctggcggtgttcgtggccgacacgccc
cagatggaggcctaccggcgcgacctgttctgggcccaggagtacgcccgacgcaaccgg
gccgtcatgatggcgctgctccggcaggtcgtcaagaagcggttccccaaggcccgcttc
gagaccgaggtctccgtccaccacaactacgtggcggaggagacccatgacggccaggac
ctgctcgtcacccgcaagggggcgatccgcgccgggctgggggacatggggatcatcccg
ggctcgatgggcgcgtcgagcttcatcgtgcgcggcctcggcaagggcgaggcctacgag
tcggcctcgcacggcgcgggccggaagatgagccggaacgcggcgcgcaagcgcttcacg
gccgaggacctcatcgcccagaccgaaggcgtcgagtgccgcaaggaccccggcgtcatc
gacgagatccccggcgcttacaaggacatcgacgcggtcatggccgcccagtccgacctc
gtcgagatcgtcgcccgcctgcgccaggtcgtctgcgtcaagggctga
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