Glycomyces sp. TRM65418: K3N28_20590
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Entry
K3N28_20590 CDS
T07425
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gly
Glycomyces sp. TRM65418
Pathway
gly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3N28_20590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gly03400
]
K3N28_20590 (mfd)
Enzymes [BR:
gly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3N28_20590 (mfd)
DNA repair and recombination proteins [BR:
gly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3N28_20590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QZD55091
UniProt:
A0A8G1J205
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All DBs
Position
4497199..4500792
Genome browser
AA seq
1197 aa
AA seq
DB search
MSQDRSVPKLASLLLAEAKSPKLARLAELASSSDRPVDVVAVPGARPLALAQAAAHASGP
VLAVTATSREAEELVESLASFIPEADIALYPAWETLPHERLSPRSDTVGARLELLHRLHA
GDVPRVIVTPVRGALQPQLKGLGAREPVQLRRGDETDLTDLAAHLVDLAYERVDLVEKRG
EFAVRGGILDVFPPTAEHPLRLEFFGDEVDSIREFSVADQRSLDEAPELRAVACRELLLT
EDVRERAAALGEDYPGLADMCAKLAQGIPVEGMESLLPALSGPDELQLFQEVLPGDALIV
AIDPERIRSRALDLVATSNEFLEASWAAAAAGAQAPVDLGAGTFTDLAEARTTALAAGQR
WWTISPFAAVPESDPVAAELAAITGESPTSGGVSDDSITVDLGITETPRYHGNTAQLVAD
MQGWTREGRAVAVVYPALGGAERAAEQLRAEGVGAHLDAAPGAFPKGEVVACTGTLSLGF
IDDASGLVVVTAADIAGGKALAAQKPRKGKATKRRGAVNPLELSPGDYVVHDSHGVGKYV
EMVRRSIGGAEREYLVIEYAASKRGQPGDRLFVPTDALDQLTRYVGGEQPSLHKLGGTDW
QKTKRRARKAVREIAAELIQLYAARQAAQGHAFSPDTPWQRELEDAFPYIETPDQMSAIM
DTKADMEARVPMDRLVMGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLASQHYGTFV
ERMGQFPVKIKQLSRFQSAREAAEIQRGIAAGEIDILVGTHRLLQAETRFKDLGLIIVDE
EQRFGVEHKEKLKALRTAVDVLTMSATPIPRTLEMAVTGIREMSTIATPPEQRHPVLTYV
GGWEAKQVAAAIHRELLRDGQVFYLHNRVESIDRAATKLRELVPEARVAVAHGKMTETQL
EQIMQGFWEGEYDVLVSTTIIESGIDIPNANTLIVERADLLGLSQLHQIRGRVGRSRERA
YAYFLYPPEQTLSDTAHERLATIAQHSELGAGMYVAMKDLEIRGAGNLLGAEQSGHIADV
GFDLYLRMVGEAVTSFKGGGEEPPAPVKVDLPLDANIPFDYVEVERLRLEMYRKISEVHS
EAELEEVREEMEDRYGPAPDQVQTLFHLARFRLLARRHGLTDVALQGKNLRFSTVDLPDS
KQMRLGRHYPDAHYKEAAGLISVPRPTTSKIGGKPLEGLALLQWCADLITDVIPEAA
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaccgatccgttccgaaactcgccagtctgctgctggccgaggcgaagtcg
ccgaaactcgcgcgcctcgccgaactcgcgtcctcgtccgaccggccggtggacgtcgtc
gccgtgcccggcgcgcgccctctcgccctcgcccaggccgccgcgcacgcctccgggccc
gtgctcgccgtcaccgcgacctcccgtgaggccgaggagctcgtcgagtccctggcctcg
ttcatccccgaagcggacatcgcgctctacccggcctgggagaccctcccgcacgagcgc
ctctcgccgcgttcggacaccgtcggcgcccgcctcgaactgctccaccgcctccacgcc
ggcgacgtcccccgcgtcatcgtcacccccgtccgaggcgcccttcagccccagctcaaa
ggcctcggcgcgcgcgaacccgtgcagctgcgccgcggcgacgagaccgacctcaccgac
ctggccgcccacctggtcgacctcgcctacgaacgcgtcgacctcgtggagaagcggggc
gagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgccgagcaccccctg
cgcctggagttcttcggcgacgaggtcgactccatccgcgagttctccgtcgccgaccag
cgctccctcgacgaggcccccgagctgcgcgccgtcgcctgccgcgagctgctcctcacc
gaggacgtgcgcgaacgggccgccgccctcggcgaggactaccccggcctggccgacatg
tgcgccaaactcgcccaaggcatccccgtcgaaggcatggagtccctgctcccggccctc
tcgggacccgatgagctgcagctgttccaagaggtcctgcccggggacgccctcatcgtc
gcgatcgaccccgagcgcatccgctcccgcgccctcgacctcgtcgccacctcgaacgag
ttcctcgaggcctcttgggccgccgccgcggccggggcccaagcgcccgtggacctcggc
gccggcaccttcaccgacctcgccgaggcccgcaccaccgcgctcgccgcggggcagcgc
tggtggacgatctcgccgttcgcggcggtccccgaatcggatcccgtcgccgccgaactc
gcggccatcacgggggagtcgccgacctcgggcggtgtctcggacgactcgatcaccgtg
gacctcgggatcaccgagacgccgcgctaccacggcaacacggcccagctcgtcgcggac
atgcagggttggacgcgcgaaggccgcgccgtcgcggtggtctacccggccctcggcggg
gccgagcgcgccgccgagcagctgcgcgccgaaggcgtcggcgcccacctcgacgccgcg
cccggggcgttcccgaaaggcgaggtggtcgcctgcaccggcacgctcagcctcggtttc
atcgacgacgcctccgggctcgtcgtcgtcaccgccgcggacatcgccggcggcaaggcc
ctcgcggcccagaagccccggaagggcaaggccaccaagcgccgcggcgcggtcaacccg
ctcgagctctccccgggcgactacgtggtgcacgactcgcacggcgtcggcaagtacgtc
gagatggtgcgccgctcgatcggcggggccgagcgcgagtacctcgtgatcgagtacgcc
gcctcgaagcgcggccagcccggcgaccgcctgttcgtccccacggacgcgctggaccag
ctcacccgctacgtcggcggcgagcagccgagcctgcacaagctgggcggcaccgactgg
cagaagacgaagcgccgcgcccgcaaggccgtccgcgagatcgccgccgagctcatccag
ctgtacgcggcccgtcaagcggcccaggggcacgcgttcagcccggacacgccgtggcag
cgcgagctggaggacgcgttcccgtacatcgagactcccgaccagatgtcggccatcatg
gacaccaaggccgacatggaggcccgcgtcccgatggaccgcctggtcatgggcgacgtc
ggctacggcaagaccgaggtcgccgtccgggccgcgttcaaggcggtgcaggacggcaag
caggtcgccgtcctcgtgccgacgacgctgctggcgagtcagcattacggcacgttcgtg
gagcgcatggggcagttcccggtgaagatcaagcagctctcgcggttccagtcggctcgc
gaggccgcggagatccagcggggcatcgcggcgggggagatcgacatcctcgtgggcacc
caccggcttctccaggccgagacgcgcttcaaggacctcgggctgatcatcgtggacgaa
gagcagcggttcggcgtggagcacaaggagaagctgaaggcgctgcgcacggccgtcgac
gtcctgaccatgtcggcgacgccgatcccgcggaccctcgagatggcggtgacgggcatc
cgggagatgtcgacgatcgccacgccgcccgagcagcgccacccggtgctgacctatgtg
ggcggttgggaggcgaagcaggtggccgcggcgatccaccgcgagctgctgcgcgacggc
caggtgttctacctgcacaaccgggtcgagtccatcgaccgggccgcgacgaagttgcgc
gagctcgtccccgaggcccgcgtggcggtcgcccacggcaagatgaccgagacccagctg
gagcagatcatgcagggtttctgggagggcgagtacgacgtgctcgtctcgaccacgatc
atcgagtccggcatcgacatcccgaacgcgaacacgctcatcgtggagcgcgcggacctg
ctggggctctcgcagctgcaccagatccggggccgcgtgggccgcagccgcgagcgcgcg
tacgcgtacttcctgtacccgccggagcagacgctctcggacacggcgcacgagcggctg
gcgacgatcgcgcagcactcggagctcggcgcgggcatgtacgtggcgatgaaggacctg
gagatccgcggcgcgggcaacctgctgggggcggagcagtcggggcacatcgccgacgtg
ggcttcgacctctacctgcgcatggtcggggaggcggtgacctcgttcaagggcggcggt
gaggagccgccggccccggtgaaggtggacctgccgctggacgcgaacatcccgttcgac
tatgtggaggtcgagcggctgcggctggagatgtaccgcaagatctccgaggtccacagc
gaggccgagctcgaagaggtgcgtgaggagatggaggaccggtacgggcccgcgcccgac
caggtgcagacgctgttccatctggcccggttccgcctgctcgcgcgtcgccacggtctc
acggacgtcgccttgcagggcaagaaccttcgtttctccactgtggatcttccggattcg
aagcagatgcgtctgggccgccattatccggacgcgcactacaaggaggcggcagggctc
atcagcgtcccgcgcccgaccacgtcgaagatcggcgggaagcccctggaaggcctcgcg
ctcctgcagtggtgcgcggacctgatcacggacgtcatccccgaagcggcataa
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