Glarea lozoyensis: GLAREA_01170
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Entry
GLAREA_01170 CDS
T04883
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
glz
Glarea lozoyensis
Pathway
glz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLAREA_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glz03019
]
GLAREA_01170
03012 Translation factors [BR:
glz03012
]
GLAREA_01170
Enzymes [BR:
glz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLAREA_01170
Messenger RNA biogenesis [BR:
glz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GLAREA_01170
Translation factors [BR:
glz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
GLAREA_01170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
ResIII
nSTAND3
FtsK_SpoIIIE
CYNS_N
AAA_16
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19460228
NCBI-ProteinID:
XP_008084119
UniProt:
S3CWI1
LinkDB
All DBs
Position
Unknown
AA seq
1424 aa
AA seq
DB search
MLRHYRSYRFRKTALSFPLSRPRRNFATTHPSYASLSQLRPVPTNVEDLCKTYPSAPPSL
FVTPWREQGWREVLGRVPYSSITENAQESKSFDCTYELELPGGLKRKATLAAVSKDEALQ
LASKELVMALHVDGTWGKILQKKDGSGDKVKPLLGNKVQKEGAGRVKAVSHLPYVTELYD
CCASAGSIPDFHFSQSRQTWLHSHWCGLPDGSLAAQGIGSKHVDATLRMLKSYIKRCRQA
QSSESGQKPSYPNRANSLQFIAYCYRDREVQQDFRVFNDKARLEVRCQALEFGLFGTVYM
DGEKISNNLYGCDRAFFKRLAVLVGAVHLAKRNPHLWSEFEAAYAEDPAQFPALDRNVAM
KTHGGSVRLNEELVEPTTVRSNVPILRKWGSSIPPQVAVEVKSVHADAHVADKGDQPQVV
EKAETETLVVDNVTSSTQPQVVAGLEDVDADVLGTEKGASLSPSQVAAEADKRTSTDSFL
EMFNRTYRIDGAPKGEFVSPVVEVVATPEMVSIMQSASRGVLHVPEGGTIEQPVFHQNKY
ATLSKVAPRTRLDKRSCLLKARQAALESKKWMQLAQGTVLESLPIRKHHEEIVAMVQENT
FSIVVGATGSGKTTQVPQMLFEEAISRVEGSTAEIICTQPRRIATSAAARRVAVERNETI
QETVGYSTRGDSKLPRRNGSITYYTTGSLLARLRQRPEQMMADVSHIIIDEVHERDIDVD
FLMVTLKDILSKRKAAGDKIPKVVLMSATLDADLFSNYFGQQMDDGSIKPCPSISIPGRT
FPVNVKTLDDIVVEMKDKADMNAWKSLIGTPAVNRFLRQEGLSIDRNLNISNAGAISDDD
SQHQVDTRGSFPLLCATIQHVLETTSEGAILVFLPGMQDILNINRLLRQYQARADFSVEQ
LTICMLHSKLKEHQDDVFNEALPGHRKVVLATNIAETSLTIPDVRYVVDSGLHRDLSFDQ
VTNTTTMGTQWVSAASLKQRAGRAGRVAEGHYYGIFSKARQESLAPAALPQMLRSDLQML
CLQVKTRVPEGNIAEILAKAIQPPKPEAVEAAIQQLKDMEALDDRENFTRLGTLLASLSV
HPAMGKLVVLGILFRCLDPMLIVAATVLSSKFFITPAHGQDVARNARKEFSQGTKSDHVA
LINAFRWARSIRRQPDFNIMMRGQYLDTYAFDEISRNMLSIEGKLVDAELIPHTSEKELL
ESQRGPPSLNENSNNLSLIKALILAGAPKNIGEMEKPNVLYISPKKRVVTARSSVCQLSR
TNQDESKQCASLYSYGVLLKTGSNGAANELSQCSPLIAALFASQARLHTSWSGVDQFILN
DWLPLGLRGINGVTGTLAAKEIMSFRAGLQTILSKASGNSLKPFDRKSGRYLADDPETIE
FTAKLVRLLEINDVGTENDSWSMMIDSILIDSENDMMSQMVGGE
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgacattatcggtcctatcgatttcggaaaaccgctctatcgttcccccttagc
agaccccgtcgaaattttgccaccacccacccctcgtatgcctcgttatcccagttgcga
ccggtgccgacaaatgtggaagatctctgcaagacgtatccttcagcacctccttctctt
ttcgttactccatggcgtgagcaaggctggagagaggtgttggggagggtcccatatagc
tccatcacagaaaacgcccaggagagtaaaagtttcgactgtacatatgaactagaactt
cctggtggcttgaaacgcaaggcaacactcgccgccgttagcaaagatgaagcactacaa
ttggcaagtaaagagcttgtgatggccttacatgttgacggaacctggggcaagatactc
caaaagaaggacggctcgggagataaagtgaagcccttgttgggaaacaaggtgcagaag
gaaggggctggacgcgtaaaagctgtctcccaccttccgtatgtgacggaattgtatgac
tgttgcgcgtcagctggatctattccggattttcatttctcgcagtcacgccaaacctgg
cttcattctcactggtgtggtctgcccgacggcagcttagccgcgcagggaataggctca
aaacatgttgacgccacgctacgtatgttgaagtcgtacataaagaggtgtcggcaggct
cagtcgtcggagtctggccagaaaccgagctatccaaaccgtgcgaattcgttgcagttc
attgcatattgctatagggaccgagaagtacagcaagatttccgagttttcaatgacaag
gcacgcctagaagttcgttgccaagctctggagttcggactattcgggactgtatacatg
gatggggagaagatcagtaataatctgtatggctgtgacagagcattcttcaagagactc
gcagtcttggtgggagcggtccacctagcgaaacggaacccgcacctatggagtgagttc
gaggctgcctacgcagaggacccggcgcagtttccagcactagaccggaacgtcgccatg
aagacacatggaggttcagtccgtttgaatgaagaactagttgaaccaacgactgtgagg
tcaaatgtgcctatccttagaaagtggggctcgtcaattccaccccaagtcgctgttgag
gtaaagagcgtgcacgcagatgcgcacgttgctgacaagggggatcaaccgcaagtcgta
gagaaagcagagacagagacgctcgttgtcgataacgtgacttcatccactcaaccccaa
gttgtcgcgggactagaagatgtggacgcagatgtgctcggcactgagaagggggcttct
ctctctccaagccaagtagcagcggaagcagataaaagaacgtcgacagacagctttttg
gagatgtttaatcgcacctacagaatcgatggcgctcctaaaggagaattcgtgtcccca
gtcgtggaagtggtggcgactcctgaaatggtatcaatcatgcaatcagcctcccgaggt
gttctgcacgttcccgagggcggaacaatcgaacagcccgtttttcatcagaataaatac
gcaactttatcgaaggttgctcctaggacaaggcttgataagcgaagctgcctgctgaaa
gcgcgccaggccgcgcttgagtcaaagaaatggatgcaattagcacaaggtacagtgcta
gagtccctcccaatcagaaaacatcacgaagagattgtcgcaatggttcaggaaaatact
tttagtatcgtggtgggcgctacggggagtggcaagaccacccaagtcccccagatgctg
ttcgaggaggcaatcagtagggttgaaggttctacagctgaaatcatctgcacgcaacca
cgtcgtatcgccaccagcgctgctgccagacgagttgccgtcgaacgcaatgaaaccatt
caggagacagtaggatactctactagaggcgactcgaaactacctcggagaaatggaagc
atcacatactacacaacaggctctcttttggctcgccttcggcaaagaccagagcaaatg
atggcagatgtcagccatatcattatagacgaggttcacgaacgtgatatagatgtcgac
ttcctcatggtgacattgaaggacattctttcaaagcgtaaggctgccggtgacaagata
ccaaaagtcgttctcatgagtgccactctcgatgccgaccttttctcaaactattttggc
caacaaatggacgatgggtctatcaaaccatgcccttctatttccatacctgggcgcact
tttcctgttaatgtcaagaccctggacgacattgtcgtcgaaatgaaagacaaagcggat
atgaatgcttggaaatcattgattggaacacctgcagtcaaccgttttcttcgacaggag
ggattatcaatagatcgcaatctgaacatttcgaacgccggggctatttcggatgatgat
tctcagcatcaggtcgacacgcgtggctctttccccctactatgtgcgaccatccagcac
gttttagaaacaacttccgagggagcaatacttgtctttctgccgggaatgcaagatata
ttaaatatcaatagacttttacggcaataccaggcacgtgccgacttttctgtggaacag
cttacgatctgtatgcttcactcgaagctcaaagaacatcaagatgatgtctttaatgag
gctctccctggccacagaaaggtagtacttgcgacaaatattgccgagacgtcactcaca
atccccgacgttcggtacgtagttgattctggccttcatcgtgacctttcttttgaccag
gtaacaaacacgacgaccatgggaacccagtgggttagtgccgcgagcttaaagcaacgt
gctggtagagctggacgcgttgctgaaggtcattattatggcatcttttccaaggcacgt
caagagtccttagctccagccgccttgcctcagatgttacgctcagacttgcaaatgtta
tgtctacaagtcaagacccgcgtgcctgaaggcaatattgctgagattcttgcgaaagcg
attcaaccaccgaaacccgaggcagtagaagctgcgattcagcagctcaaagacatggaa
gctttggatgatagagaaaacttcacccggctaggaacgttgcttgcctccctatccgtt
caccctgctatgggtaaattggtggtccttgggatcctctttcgctgcctggatcccatg
ttgatagtggctgctacggtactgtcgtccaaattctttattaccccagcacatggtcag
gatgtggctcggaacgcgagaaaagaattcagtcaggggactaaaagtgaccacgttgct
ttgataaacgctttccgctgggcgcgctccattcgaagacagccagactttaacattatg
atgagaggacaataccttgacacctacgcgtttgacgagattagtaggaacatgcttagt
attgaagggaaacttgtggatgctgaacttataccacatacttcagaaaaagaactgctc
gagtctcagcgtggccctccatcactgaacgagaattccaacaatctttctctcatcaaa
gcacttatcttggcaggggcgcccaaaaacatcggcgagatggaaaagccaaacgtgctt
tacatatcaccgaaaaaacgtgttgtgacagcacggtcttcggtctgtcaacttagtcgc
acaaatcaagatgagtccaagcaatgcgcctcactatattcatatggcgtgttgttaaag
actggcagtaacggtgccgcaaatgagctcagtcagtgctcgccactgattgcagcatta
tttgcatcgcaagccagactgcacacatcctggtctggcgtcgatcagttcattctcaat
gactggctgcctttgggattgcggggaatcaacggggtaactggcacgctcgccgcgaaa
gaaatcatgagctttcgtgcaggtctacaaactatcttgtcgaaggcttcagggaactct
ttgaagccatttgaccgtaaaagtggcagatatcttgctgacgatccagagaccatcgaa
ttcactgccaagttggttaggcttcttgagattaatgacgttggaacggaaaatgacagc
tggagtatgatgatcgattcgatcttgattgactctgagaatgatatgatgagtcagatg
gtgggaggagaataa
DBGET
integrated database retrieval system
