Glarea lozoyensis: GLAREA_05643
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Entry
GLAREA_05643 CDS
T04883
Name
(RefSeq) ENTH/VHS
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
glz
Glarea lozoyensis
Pathway
glz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GLAREA_05643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
glz03021
]
GLAREA_05643
03019 Messenger RNA biogenesis [BR:
glz03019
]
GLAREA_05643
Transcription machinery [BR:
glz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GLAREA_05643
Messenger RNA biogenesis [BR:
glz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GLAREA_05643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
VHS
zf-CCHC_4
zf_PCFS4
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
19464697
NCBI-ProteinID:
XP_008077123
UniProt:
S3DF00
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MNSEISDGVAEDFRQALLDLTMNSRYEISNLTVIARENTEHAYAISEALKLHIKQTSPQK
KLPAFYVLDSVVKNVGTPYTIFLSRGLYSTFMEAYALVDTNVRRKMDEMLKTWKEPVPGA
LDTRPVFPRDVTGPIENALIKARTSAVQAHNEYLRSQQQNRPRSAVPNIPPHRDTPTPPA
TYRQAAPPTTQNPPNTYQSSQNSYRQPSQPSMPTPPTSFRPPPPAVSTPPVNYALAAHQP
NSYGGTAQPPVPTHYGLPVQPPPSNSSNSAPPQLPPSMLMELLRASGRLPQMPMPPAPPV
NIPTPPLNSASGFPPPFGAVPPPYIKPPPVVNTPPFVGATPVARVPLAELPNDVVFSDPH
SLKLPRPHLISRLYEKLGTACTQCGRRFPTDEAGKKKKADHMDWHFKVHSRMRDAERTGQ
HRSLYVDEFDWIKSREVEGDEVAAKANGINGAGAASSSLDSKPELQFLPVPDDPVLASSH
CPICQEKFETKWDYNVDEFVWTDARKVGERIFHASCYAEAAKDLNSLLKRNTPEPVLGKR
KAEEDHIALRSKIKTEPTY
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaatctctgacggtgtcgccgaggatttccggcaggctcttctcgatctt
accatgaattcgagatatgaaatcagcaatctaacagtcatcgcaagggagaatacagaa
cacgcgtacgccatttcggaagctctcaagcttcatattaaacagacctctcctcagaag
aaacttccagccttctatgtcctcgactcggtggtgaaaaatgtcggaacaccctacacc
attttcttatcccgtggactttactctacctttatggaggcatacgcccttgtggataca
aacgttcgacggaagatggacgagatgttgaagacatggaaagagccagtccccggtgct
ctcgacactagaccagtctttcctcgtgatgtgacaggacccattgagaatgctttaatc
aaagccaggacatctgctgtccaggctcataatgaatatcttcgaagccagcaacagaat
cggccgcgctcagcagtgccaaacatcccgcctcatcgagacaccccgacacctcccgct
acatacaggcaagctgccccacctaccacacagaatccgccaaatacatatcaaagctcc
caaaacagttatcgacagccgtctcagccatctatgcctactcccccaacttcatttcgg
ccacctccaccagcagtctcgacaccgccagtaaattatgccttggctgcccatcagcca
aacagctatggcgggactgctcaaccacctgttccaactcattatggattgccagtccag
ccgcctccatctaacagctcaaattcagctccaccacagcttccgccgtctatgctgatg
gagctgcttcgtgcatcaggaagattacctcaaatgcctatgcctccagctccgccagta
aacattcccacccctccattaaactcggcttcaggattcccgccaccctttggagccgtg
cctcccccctatattaagcctcctccagttgtaaacacgcctccctttgttggcgccaca
cctgtcgcaagagtacctctagcggagttgccgaacgatgttgtgttctcagatccccac
tctctaaaattaccgcgaccgcatctcatatcgcgtctctacgaaaagcttgggactgct
tgcactcaatgcggtcgccgcttcccgactgacgaagcaggtaagaagaagaaggctgat
cacatggattggcacttcaaagtacattctcgcatgagggacgcagagagaactgggcaa
caccgcagcttatatgtggacgaatttgattggattaaatctcgtgaagtagaaggagac
gaggttgctgcgaaggcaaatggtataaatggtgctggcgccgctagctctagcttagat
agcaaaccagagctgcaattcctccctgtgcctgacgatccagtattggctagtagccat
tgtcctatttgtcaagaaaaatttgagactaaatgggattataacgtggatgaattcgtt
tggacagacgcgcggaaggttggcgagcggatttttcatgccagttgttatgcggaagca
gctaaggacttgaattccctattgaagaggaatacaccagagccagttcttgggaaaaga
aaagccgaggaggatcacattgctttgagatctaagatcaagacagagccgacttattga
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