Glarea lozoyensis: GLAREA_09020
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Entry
GLAREA_09020 CDS
T04883
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
glz
Glarea lozoyensis
Pathway
glz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLAREA_09020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glz03019
]
GLAREA_09020
03041 Spliceosome [BR:
glz03041
]
GLAREA_09020
03009 Ribosome biogenesis [BR:
glz03009
]
GLAREA_09020
03016 Transfer RNA biogenesis [BR:
glz03016
]
GLAREA_09020
Enzymes [BR:
glz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLAREA_09020
Messenger RNA biogenesis [BR:
glz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GLAREA_09020
Spliceosome [BR:
glz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GLAREA_09020
Complex C
U4/U6.U5 tri-SnRNP related factors
GLAREA_09020
Ribosome biogenesis [BR:
glz03009
]
Eukaryotic type
Pre-60S particles
Helicases
GLAREA_09020
Transfer RNA biogenesis [BR:
glz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GLAREA_09020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
19468068
NCBI-ProteinID:
XP_008076172
UniProt:
S3DEN5
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
MDDDLFDVFDDKPRMAVVTKPRKEKKHKKDKSKKRNLNGNVKPAAEEADGDAEMVEAEAA
PEPEEEEEGEDNDLVEKKDTKRRRLEQEAEPVVTDAFETAQSREVAASAGLQAKDDGALV
LQHNIQHQVSLPPDYVYVPISQHKSPEKPARTWPFELDPFQKVSIASIERNESVLVSAHT
SAGKTVVAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTAT
CLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKSRGVVWEETIILLPDKVRYVFLS
ATIPNAMQFAEWITKTHQQPCHIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFREDNF
QKAMATIEEKKGSDPSDINARQKGRGKNKKTNTGGNKDTSDIYKIVRMIMLKHYNPVIVF
SFSKRECEAYALQMSTMAFNDDSEKAMVSKVFESAIESLSEEDKTLPQIQHILPLLRRGI
GVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVQKFDGTSQRYL
TPSEFVQMSGRAGRRGLDDRGIVIMMINDKMDPPTAKEIVRGEQDKLNSAFYLGYNMILN
LMRVEGISPEFMLEHCFYQFQNTSGVSGLEKDLHDLQIERDSVEIPDEAIIKEYFDLRQQ
LTQYTKDMRDVINHPNYCLQFMQPGRIVHIKYQDQDYGWGAVVKFTPRRPAKDESNPLAP
QESYILDVLLRISDHSHVPTQTTTDIPPGLHPPAEGEKGKMEVVPVLLSCIEAIGHVRIF
MPKSLTHTDERNTVRKSLEEVSRRFPDGISVLDPIEHMGITDDSFKKLLRKIEVLESRLL
ANPLHNSPRLPELYNQYAGKIDMGLKIKEKKKAITAALSIMQLDELKSRKRVLRRLGFIN
DQEVVQLKARVACEISTGDGHECLLAELLFNRFFNEMSPEMCAAVLSCFIFEEKSQAPAL
KEELSKYFREIQSQARIMAKVSQESKLKVNEDEYVESFKWQLMDVVLAWAQGKSFAEICK
MTDVYEGSLIRLFRRLEELLRQMAQAGKVMGSDELSAKFEESLSKIRRDIVAAQSLYL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgacctcttcgatgtgttcgacgacaaacctcggatggccgtcgtaacgaaa
ccccggaaggaaaagaagcacaagaaagataaatcgaagaagaggaatctcaatgggaat
gtcaagccagcggccgaggaggctgacggcgatgcggagatggtagaggcggaagctgcg
ccagaaccggaagaagaggaagagggggaagacaatgatctggttgagaagaaagatacg
aagagacgcagattggagcaggaagccgaaccagtcgtcaccgatgctttcgaaaccgcg
caatccagagaagtcgcagcatcagcaggtctgcaggcaaaagatgacggagctcttgtt
cttcagcacaacatacagcatcaggtctccttaccgccagattatgtctatgtaccgatt
tcgcagcacaagtcgccagagaaacccgcccgcacctggcccttcgaattggatccgttc
cagaaagtttccattgcctcgattgaaaggaacgagagtgttctggtctctgcgcatact
agtgctggaaagacggtggttgcagagtatgccattgctcagtgtctgaagaacaaccag
agggtgatttacactagtccaattaaggcgctcagcaatcaaaagtatcgagagttcgcg
gcggaatttggtgacgtgggactcatgaccggagatgtcacaatcaatcctactgcgact
tgtttggtcatgactacagagattctgcgaagcatgttgtatagaggatctgagatcatg
cgcgaggttgcgtgggtagtcttcgacgagattcattacatgcgagacaaatcacgaggt
gttgtatgggaggagacaatcatcttgttgccggacaaggtcagatatgttttcctctcc
gcaactattccaaatgccatgcaattcgcagaatggatcacgaaaactcatcaacaacct
tgccatattgtatacaccgatttccggccaacaccattgcagcactactttttcccagcc
ggagctgacggaatacaccttatcgttgatgagaagggcaacttccgtgaagataacttt
cagaaagccatggccaccatagaggaaaagaaaggatcagatccatccgacataaatgcg
aggcagaaaggaaggggtaagaacaaaaagacaaatactggtggcaacaaagacacttca
gacatttacaagattgttcgaatgatcatgttgaagcactacaatccggtcatcgtattc
agctttagcaagcgagaatgtgaagcatatgctttgcagatgagcactatggcgtttaat
gacgactccgaaaaggcgatggtcagcaaggtctttgagagcgcgatcgaatcattatcg
gaagaagacaaaactctaccacagatccaacacattttaccgttacttcgcagaggtata
ggagtccatcattctggcttgctccctattctgaaggaaaccattgaaattcttttccag
gagaatttaatcaaggtcttgtttgccacggagactttctcgattggtctgaatatgcct
gcgaaaaccgttgtctttacaagtgttcagaagtttgatggtacttcgcaacgatattta
acaccttcagagtttgtacagatgtccggacgtgctggaagaagaggtcttgatgacaga
ggtattgtcatcatgatgatcaacgataagatggaccccccaacagctaaagaaattgtt
cgaggagagcaagataagttgaactcagcattctatcttggctacaacatgattctgaat
ttgatgcgagttgagggtatatcaccggaattcatgctggaacattgcttctatcaattt
caaaatacttctggtgtctcgggtctggaaaaagatcttcatgatttacaaatagaacga
gactcggtcgaaattcctgatgaagccatcatcaaggagtacttcgacctccggcaacag
cttacgcagtatacaaaggacatgcgcgatgtcatcaatcatcccaactattgtttacaa
ttcatgcaacccggtagaattgttcacattaaataccaagatcaggattacgggtggggc
gctgttgtcaagtttacacccagaagacctgccaaggacgaaagcaacccactcgctcca
caggagtcttatatactcgatgttcttttgcgcatttctgatcattctcatgttccaaca
caaacaacaacagacatcccaccaggtctgcacccaccagccgaaggcgagaagggcaaa
atggaagttgttcccgtgctactttcatgcatcgaagctattggtcacgtccgtatattc
atgcctaagagcctcacgcatactgacgagcgaaataccgttcgaaaatcgcttgaggaa
gtcagccgcaggtttccagacggaatcagcgttttggaccctattgaacacatgggcatc
acggatgattccttcaaaaagctgcttcgtaagattgaagttcttgaatctcgtctactc
gcaaaccccctccataattctcctcgtctcccagaactgtacaaccagtacgcaggaaag
atcgatatgggtctgaaaatcaaagaaaagaagaaggcaattactgcggcgctcagcatc
atgcagttggacgagctcaagtctcgaaaaagagtgttgcgtcgactgggatttatcaat
gatcaagaagttgttcagctcaaagctcgtgtggcttgtgagatctctacaggcgacggt
catgaatgcctgcttgccgagttactcttcaatcgcttcttcaatgagatgtcgcctgaa
atgtgtgcagcagtcctttcgtgcttcattttcgaggagaagagtcaagcacctgcactc
aaagaagagctttcaaaatattttagagagattcagagtcaagccagaatcatggcaaag
gtcagccaggaaagcaagttaaaggtcaacgaggatgagtatgtagagagcttcaagtgg
cagctcatggatgttgtcttggcttgggctcagggaaaatcctttgccgagatttgtaaa
atgacagatgtttacgagggatcactcatccgcctgttccgacgtttggaggagttgttg
cgacaaatggctcaagccgggaaagtgatgggctctgacgagctgtcagccaagttcgaa
gagtcgttgtccaagattagacgagatattgtggctgctcaaagtttgtacctgtaa
DBGET
integrated database retrieval system
