Granulicella mallensis: AciX8_0440
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Entry
AciX8_0440 CDS
T01664
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gma
Granulicella mallensis
Pathway
gma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AciX8_0440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gma03400
]
AciX8_0440
Enzymes [BR:
gma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AciX8_0440
DNA repair and recombination proteins [BR:
gma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AciX8_0440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
CBM87_Agd3
AAA_22
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEU34793
UniProt:
G8NNK8
LinkDB
All DBs
Position
complement(515756..519661)
Genome browser
AA seq
1301 aa
AA seq
DB search
MILPFVRELMADMEHSAAFERARRHLAGGTGRRRVSGLTATARALYLPYFVRASQAPALV
IVSDNKAAEALHAAVLAACELTGVLAVEEVLRLPAHDVLPFENLSPHPEIQEQRAAALWK
LASGAAKLVIAPVEAVCMKLFARDFYAALALTLRTGEEHIPEMLIEHLVSVGYTRVDVVE
MPGQVTVRGGILDVYGPEMERPVRIDFFGDEIESMRRFDPDTQRSSSALDEILLLPLTET
PVTEKLLTAINARLTRSGTAAGAELEGGETPNELVTHVATRTGEATIFPGWEFYAAVAGA
KSSLLDLMGAPSANGPRVFIEEPSMVDNQGERWWNKVEQRHDRAGIGSLVRPEDLYLSPW
ELQDRVRAYSGCELDQIGIVDVLDADRSDASEIEFATRPTMRFHGSIPALVDQLKSLMEN
EARVLIAAANQGEVERLAGLLQEYGVPYRIGSRPQQGGSTTVYSESSYLAGDLRTPVIVR
AAIANGVQILDLDRATARQLVVIGANDLSDDADVHARPAARRSKTAAFISDFRDLAVGDY
VVHVEHGIARYEGLRTLDQPDAPPLELMILNFADDAKLYVPLTRLDLIQKYRSTETGPAP
QLNRLGNPAWAKTKARVKKAMQDMAEELLKLYAQRKAAVGTAFSPDTNMQHEFEDAFDFN
ETDDQLRAIADIKADMESTQPMDRLLCGDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTV
LCFQHFESFKRRFSKFPVVVEMISRFRTAKEKKDVLERTAQGKVDILIGTHAILSQSLQF
QDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLSMSATPIPRTLNMSLVGLRDMSVIETPP
KDRMAIQTVVAKFDEKLIRTAVEVELERGGQTYFVHNRVETIYELASMIRELVPQARVVV
GHGQMPEAELERVMLAFMDGEYDVLCATSIIENGLDISKANTIIINRADRHGLSELYQLR
GRVGRSNRRAYAYLLIPPEQQLTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLG
GEQSGHIEAIGFEMYTTMLEEAVSRLKGEGREERPQVTVNLGISLRIDDAYIAEENQRLR
MYKRIAGSQTQAELAEVRDELQDRYGTPPENVLHLLAAGEIRLTCEQLGIAQIERKRTAI
EEPAKKPAPPAKPPARPAYGAWAPSTMARPPLAGRHGQPPQTANLQFSSRAALNRTESNV
ARAVRETAAVRPANAPLAQAGKIKAMRDMLYVTFSDKLHTAPAQEGKGVNVGALMKLVSR
NAKNGAQLTPQGILKWPLTSAQADVVIAETRELLTALDAGA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgattcttcccttcgtccgcgagttgatggcggacatggagcactccgcagcttttgag
cgtgcgcgtcgccacttggcgggcggcacgggccggagacgtgtgtccggactcaccgcg
accgcacgagcgctctatcttccctacttcgtccgtgcgtcccaggctccggcgctggtg
atcgtctccgacaacaaggccgccgaggccctgcacgccgcggtgctcgcggcctgcgag
ctgaccggcgtgctcgccgtcgaagaggttttgcggcttcccgcgcatgacgtgctgccg
ttcgagaacctgtcgccgcatcccgaaattcaagagcaacgcgcggcggcgctatggaag
ctcgccagcggggccgccaagctggtgatcgcgcccgtcgaagccgtctgcatgaagctc
ttcgcccgggacttctacgctgccctggcactgaccctgcgcacaggcgaggagcacatc
cccgagatgttgatcgagcacctggtctcggtcggctatacccgcgtagatgtcgtcgag
atgcccggacaggtcaccgtccgcggaggcatcctcgatgtctatgggccggagatggag
cggccggttcgcatcgacttcttcggcgatgagatcgagtcgatgcgccgcttcgatccc
gatacgcagcggtcaagctccgcgctcgatgagattctgctgctcccgctcaccgaaaca
ccggttactgaaaagcttctgaccgccatcaacgcgcggctcacccgcagcggaacggct
gctggcgctgagctcgaaggcggcgagacgccgaacgagctggtcacccacgtggccacc
cgcaccggcgaggccaccatctttcccggctgggagttctatgcagccgttgccggcgct
aaatcctctctgctcgatttgatgggagcgccctccgccaacggcccgcgcgtcttcatc
gaagagccctcgatggtggacaaccagggcgagcgctggtggaataaggtcgaacagcgg
catgaccgcgcgggcatcggctcgctggtacgaccggaagatctgtatctctcgccgtgg
gagctgcaggaccgtgttcgcgcgtactccggctgtgagctcgaccagatcggcatcgtc
gatgtgctcgatgcggaccgcagcgatgccagcgagatcgagttcgcgacgcggccgacc
atgcgcttccacggctcgattcccgcgttggtcgaccaattgaagtcgctgatggagaac
gaggcccgcgtgctgatcgccgccgcgaaccagggcgaagtcgagcggcttgcgggattg
ctgcaggagtacggtgtgccctaccgcatcgggtcgcggccccagcagggcggctccacg
acggtgtactcggaatcgagctacctggccggagacctgcgcacgccggtgatcgtgcgc
gcagctatcgccaatggcgtgcagattctcgatctcgaccgcgcgacggcgcggcagctc
gtggtcatcggggccaacgatctctccgacgatgccgacgtccatgcgcggcccgcggcc
cgcaggtcgaagacggcggcgtttatctcggacttccgcgacctggcggtgggtgattat
gtcgtgcacgtggagcacggcattgcgcggtacgagggtctgcgtacgctcgaccagccc
gacgcgccgccgctggagctgatgattctcaacttcgcggatgacgcgaagctgtatgtt
ccgctcacgcggctcgacctgatccagaagtatcgctcgaccgagaccggccccgcgccg
cagttgaaccggctcggcaatccggcgtgggccaagaccaaagcgcgggtcaagaaggcc
atgcaggacatggccgaagagctgctgaagctctacgcgcagcgcaaggccgcggtgggc
acggcgttttcgcccgacaccaacatgcagcacgagttcgaagacgccttcgacttcaac
gagaccgacgaccagttgcgggccatcgccgacatcaaggccgatatggaatcgacgcag
ccgatggatcgcctgctctgcggcgacgtcggttacggcaagaccgaggtcgccatgcgc
gcggcgttcaaggccgtgcaggacggcaagcaggtcgccgtgctcacgccgacgacggtg
ctctgtttccagcacttcgagagcttcaaacggcggttcagcaagttcccagtcgtcgtc
gagatgatctcgcgcttccgcaccgcgaaagagaagaaggatgtcctcgaacgcaccgcg
cagggcaaggtcgatatcctgatcggcacccacgcgatcctctcccagagcctgcaattc
caggacctcggcctgctggtcgtcgacgaggaacagcgcttcggcgtgcgccataaagag
cgtttgaagcagatgcgcgccgccatcgatgtgctgtcgatgtcggcaacgccgatcccg
cgcactttgaatatgtcgctggtcgggctgcgcgatatgagcgtgatcgagacgccgccc
aaggaccgcatggccatccagacggtcgtggcgaagttcgacgaaaagctgatccgtact
gcggtcgaggtggagctggagcgaggcgggcagacgtactttgtgcataaccgcgtggag
acgatctacgagctggcttcgatgattcgcgagctggtgccgcaggcccgcgtcgttgtg
ggccacggacagatgcccgaggccgaactggaacgcgtgatgctcgcgttcatggacggc
gagtacgacgtgctctgcgcgacaagcatcatcgaaaacggcttggacatctcgaaggcg
aacaccatcatcatcaaccgcgcggaccggcacggtttgagcgagctttaccaattgcgt
ggacgcgttgggcgctccaaccgccgcgcgtatgcgtacctgttgattccgccggagcag
cagcttacggagatcgcacggcgcaggctggcggcgctcaaggagttctcggacctcggc
gcgggcttcaagattgcggcgctggatctggagctgcgcggcgcgggcaacatgctcggc
ggcgagcagagcgggcacatcgaggccatcggcttcgagatgtacacgacgatgcttgaa
gaggccgtaagccggctgaagggcgagggacgcgaggagcggccgcaagtgacggtgaac
ctcggcatctcgctgcgcatcgacgacgcgtatatcgcggaagagaatcagcggctgcgc
atgtacaagcgcatcgccggatcgcagacccaggcggagctggccgaggttcgcgacgag
ctgcaggaccgctatggaacgccgccggagaatgtgctgcacctgctcgccgcgggcgag
atccgcctgacctgcgagcagctcggcattgcgcagatcgaacgcaagcgcacggcgatc
gaagagcctgcgaagaagcccgcgccaccggcaaagccgccggctcgtcctgcttatgga
gcgtgggctccgtctacgatggcacggccaccattggcgggacgtcatggacagccgcca
cagacagccaatctgcagttctccagccgggcagcgctgaatcgcacggagtccaacgtc
gcgcgtgcggttcgcgagacggcggcggtgcgaccggcgaatgcgccgctggcgcaggcc
ggaaagatcaaggccatgcgcgatatgctgtatgtcaccttcagcgacaagctgcacacg
gctccggcgcaggaggggaaaggcgtcaacgtgggggcgttgatgaagctcgtctcgcgg
aatgcgaaaaatggggcgcagcttacgccgcaggggattttgaagtggccgctgacgagt
gcgcaggcggatgtggtgattgcggagacgcgagagttgttgacggcgctggacgcaggg
gcgtag
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integrated database retrieval system
