Granulicella mallensis: AciX8_3928
Help
Entry
AciX8_3928 CDS
T01664
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gma
Granulicella mallensis
Pathway
gma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AciX8_3928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gma03019
]
AciX8_3928
03009 Ribosome biogenesis [BR:
gma03009
]
AciX8_3928
Enzymes [BR:
gma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AciX8_3928
Messenger RNA biogenesis [BR:
gma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AciX8_3928
Ribosome biogenesis [BR:
gma03009
]
Prokaryotic type
rRNA processing factors
AciX8_3928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
AEU38211
UniProt:
G8P265
LinkDB
All DBs
Position
complement(4965788..4969321)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSKEIYISSTPHETRLAIVEKDELTEIYYERENEYTLAGSIYNGRVTRVLPGMQSSFVDI
GLERDAFLYITDFMEEAGDSADFESADSRSARGEKRGEGRGRGRRDEEGAEVSPEAAAEA
PVRAEGEGRRERGNRNERGDRNKGDRGRRDGREAPAVPAELAPQDEVFAAAPRESDTDEV
GEGAPGADGSRRWRGRRGRRRGRGGNDDQRGLARSNDNGEAVSTEAPEPEFQAEAAPEEV
VPREERSGGRERRGRGEDRGGRHDSVRERFAPRGDRGGSREEDGFEASAPIEPIILPGES
LSKYRRGEDGEASASHSSSSLAPNVIIPKPSTEVVPLLGWDGGATLPGETLSRHRDRSSE
PRNESSFAREDRGGREGGNGRDRRRDRDQQRQGGRNEVHSESPRRALDPAEAVLPAVTSQ
HEPEANVMPFSDDAPAYETQAFDVQQYQQEIEAAEALEPVYEPQTDVAPLEAEAENAPVL
EAVEELHETVVEFHETTTEYEPGEDASVTYRVDPVSPSEFRQSAPESVEALSEEAEGAPV
HEFTTIQPTGEMISETPLAEVAPQDAENPAAPIEHEQAVQSVHLAQAETTPVPHEGAQIF
APGDGELEEELLDDEDSDLPHVHAGAFEDDMEEETLEGAADLGTMLREMSIDQITRPEPA
ELDDEDDDFDIDEEEIEEDEFESDDEISGSDVSEAEEEEFAEADAFEDSPIGEEAVASGE
EGEARPAQREGERRGRRDGRRGGRGDRNGDRGSRDKRGMANSRPGGRPGRHSVQATDLPA
ISDLLKPGQEVLVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVGVSRKIDSDGERR
RLKEILLSEKGDASGGFIVRTAASGASEEELRSDLRFLLNLWADIKQRSESSKSPALIYH
DLNLVERILRDQVTDNFSAIWVDTETEYERVLRFLQRFQPSLIRRVKLYTKETPLFEQFG
ITEEINKALRSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLDAIPE
IVRQIRLRDLGGIIIIDFIDMDERKNRHKVMAALEEELKKDRAPSKVLQFNDFGLVAITR
KRVKQSLERTLSTTCGICAGTGMVKSPITVCNDIYIEMRKMHKHLDKGDIMLRVNPEVVK
QLKSGSGKWLQEMEEMSGKTILVKSDPSLHPEQFDIH
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaatttacatctcaagcacgccgcacgagacgcggctcgccatcgtcgaa
aaagacgaactcacggagatctactacgagcgcgagaatgaatacacgctcgccggctcg
atctacaacggacgggtaacccgcgtcctgccgggcatgcagtccagctttgtggacatc
ggcctggagcgcgacgcgttcctgtacatcaccgactttatggaagaggctggcgactca
gcggattttgaatccgccgatagccgctcggcccgtggcgaaaaacgcggcgaaggccgt
ggacgcggccgccgtgacgaagagggcgctgaggtttctcccgaagccgctgccgaggct
ccggtccgcgctgagggtgaaggccgccgtgagcgtggcaaccgcaatgagcgtggtgac
cgtaataagggcgatcgtgggcgtcgtgatggccgcgaggctcctgccgtcccggctgag
ttggcgccgcaggacgaagtttttgctgctgctccgcgtgagagcgataccgacgaagtt
ggcgaaggcgctcccggagcggacggcagccgccgctggcgtggtcgccgtggccgccgt
cgcggccgtggtgggaatgacgatcaacgtggcttggcgcgctccaatgacaatggagaa
gccgtttcgaccgaggctcccgagcctgagtttcaggctgaagctgctccagaagaggtt
gtgccccgcgaagagcgcagcggtggccgtgagcgtcgtggccgtggcgaagatcgtggc
ggacgccatgactcggtacgtgagcgctttgctccgcgcggcgaccgtggcggctctcgc
gaagaggatggtttcgaggccagcgcgccgatcgaaccgatcatcctgccgggcgagtcg
ttgtcgaagtaccgtcgcggcgaggatggcgaggcttcagcctcgcacagttcatcgagc
ttagcgccgaacgttattattccgaaaccttctaccgaagttgttcctttgttgggctgg
gacggcggagcgacgcttccgggcgagacgctttcgcggcatcgtgatcgcagttcagag
ccgcgcaacgagagctcttttgcgcgcgaggatcgtggcggacgcgagggcggcaatggc
cgtgatcgccgtcgcgaccgcgatcagcagcgccagggtggacgtaacgaggttcactcg
gagagcccgcgccgggcgcttgatccggccgaagctgtgctgcctgcggtgacctcgcag
catgagcctgaagcgaacgttatgccattcagcgacgacgctccggcctacgagacgcag
gcatttgacgttcagcagtaccagcaggagatcgaagcagcagaggccctggagcctgtt
tacgagccccagaccgatgtcgctcccctggaagcagaggcagagaacgcgcctgtgctc
gaagcggtggaagagctgcacgagacggtcgtagagttccacgagaccacgaccgagtac
gagccgggtgaggatgcctcggtgacctaccgcgtcgatcctgtcagcccgagcgaattc
cgccaaagcgcgcctgaatcggttgaggctctttcggaggaagccgaaggcgctcctgtc
cacgagttcacgacgattcagccaaccggcgagatgatctcggagactcccctggctgag
gtggctccgcaggatgcggagaacccggcagctcccattgagcatgagcaggccgtgcag
tcggtgcatttggcacaggctgagacgacaccggtcccccatgagggggcgcagatcttc
gctcccggagacggcgagctcgaagaagaactgctggacgacgaggacagcgatcttccg
catgtccatgccggagcctttgaagacgacatggaagaagagacgctggaaggtgcagcc
gatctcggaaccatgttgcgcgagatgtcgatcgaccagatcacgcggcctgagccagcg
gagctggacgatgaggatgacgacttcgacatcgacgaagaagagattgaagaggacgag
ttcgagtcggacgatgagatctccggcagcgatgtgagcgaggccgaagaggaagagttc
gccgaggcggatgcgtttgaggactctccgattggcgaggaggcggttgcctcaggcgaa
gagggtgaagcacgaccggcgcagcgtgagggcgagcggcgtggacgtcgcgatggccgc
cgcggcggacgtggggatcgcaacggagaccgtggttcgcgcgacaagcgtggcatggcg
aactcgcgtcccggtggacgtcctggacggcactccgtacaggcgaccgacctgcccgcg
atcagcgatctgctgaagcccggccaggaagtgctggtgcagattgccaaggagccgatc
gcgaagaagggtgcgcgcatcacgtcgcacatcgctcttccaggccggttcctggtcttt
atgccgacggtcaaccacgtaggtgtctcgcgcaagatcgactcggacggcgaacgccgc
cggttgaaggagattctgctttcggagaagggcgacgcgagcggcggcttcatcgtgcgc
acggcggcgtccggtgcgagcgaagaagagctgcgcagcgatcttcgcttcctgctgaac
ctgtgggcggacatcaagcagcggtcggagtcgtcgaagagcccggccctgatctatcac
gatctcaacctcgtcgagcgcatcctgcgcgaccaggtgacggacaacttctccgcgatc
tgggtggataccgagaccgaatacgagcgcgtactgcgcttcctgcagcgcttccagccg
agcctgatccggcgtgtgaagctctacacgaaggagacgccgctgttcgagcagttcggc
atcaccgaggagatcaacaaggcgctgcgctcgaaggtgtggctcaagtccggcggatcg
atcgtgatcaaccagaccgaggcgctggtcgcgatcgacatcaacaccggcaagtacgtc
ggcaagacggcgcggctggaagacacgatcgtcaagacgaacctcgatgcgatccccgag
atcgttcgccagattcgtctgcgcgatctgggcggcatcatcatcatcgacttcatcgac
atggacgagcgcaagaatcgccacaaggtgatggccgcgctcgaagaggagttgaagaag
gaccgcgcaccctcgaaggtgctgcagttcaatgacttcggcctcgtcgccattacccgc
aagcgtgtgaaacagtccctggagcgtacgctctcgacgacctgcggcatctgcgcgggc
acgggcatggtgaagtcgccgatcacggtgtgcaacgacatctacatcgagatgcggaag
atgcacaagcatctcgacaagggcgacatcatgctgcgcgtgaatccggaggtcgtgaag
caattgaagtccggcagcggcaagtggctgcaggagatggaagagatgtcgggcaagacg
atcctggtgaagagcgatccgagtctgcatccggagcagttcgacatccactag
DBGET
integrated database retrieval system
