Geobacillus sp. Y4.1MC1: GY4MC1_0422
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Entry
GY4MC1_0422 CDS
T01348
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gmc
Geobacillus sp. Y4.1MC1
Pathway
gmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GY4MC1_0422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmc03019
]
GY4MC1_0422
03016 Transfer RNA biogenesis [BR:
gmc03016
]
GY4MC1_0422
Enzymes [BR:
gmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GY4MC1_0422
Messenger RNA biogenesis [BR:
gmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GY4MC1_0422
Transfer RNA biogenesis [BR:
gmc03016
]
Prokaryotic type
tRNA degradation factors
GY4MC1_0422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ADP73262
UniProt:
A0A7U4DJB6
LinkDB
All DBs
Position
458179..460464
Genome browser
AA seq
761 aa
AA seq
DB search
MDQSLVERILTFMQDEAYKPLTVQELEEAFGITDAAAFKEFVKALVAMEEQGLVVRTRSN
RYGVPEKMNLVRGKVSGHAKGFAFVVPDDPELDDIFIPPSEMKNAMHGDTVLVRVHADSS
GARREGTIVRILERGVTEVVGTYTESKYFGFVIPDDKKIVNDIFIPKHAANGAVEGHKVV
VRLTSYPQGRMSAEGEVVKILGHKNDPGVDILSIIHKHGLPLQFPDEVLEHANRISDTIS
EKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQS
VIRTTERMTYSDVNKILVDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFDFK
EAKVLVDENGKPYDVVLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQARYDAE
SLGHYGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLINGQMDEQTQQKWAEKLPDIAAHAS
NMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYHYDERSYAMIGERTGKVYRIGDQITVRVINVNKDERIVDFEIVGMKDRRRKEPKHA
PVVIEGKKRKKRNKDEKTKKAKKFYEDIPKLKAKKKKKKKK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtcattagtcgagcgaattttaacgtttatgcaggatgaggcgtacaagcct
cttaccgttcaggagctggaagaagcgttcggtatcacggacgcggcagcgtttaaggag
tttgttaaagcgcttgttgcgatggaggaacaagggcttgttgtacggacgagaagcaac
cgttacggtgtgccggaaaaaatgaacttagtgcgcggaaaagtgtccgggcatgcgaaa
ggattcgctttcgtcgtgccggatgatccggagctcgatgacatttttattccgccttct
gagatgaaaaacgcgatgcatggcgatactgtattagtgcgcgtgcatgccgactcttca
ggtgcgcgccgagaggggacgattgtgcgcattttagaacgcggcgtcaccgaagtggtc
ggcacttatacggaaagcaaatatttcggatttgtcatccctgatgataaaaagattgtc
aacgatatttttatcccgaaacatgcggcaaacggggccgtggaagggcataaagtcgtc
gtgcggctcacctcatacccgcaagggagaatgagcgccgaaggggaagttgtaaaaatc
ctcggccataaaaacgatccgggcgtcgatattttatccattattcataagcacggcctt
ccgttgcaatttccagatgaagtgctcgaacatgccaaccgcatttccgacacgatttcg
gaaaaagacttgcaagggcgccgcgatttgcgcgaccaaatgattgtcacgattgatggc
gaagacgccaaagacttagatgacgccgtcactgtcacgaaattggcaaacgggcattat
aaacttggcgtccacattgccgatgtcagctattatgtcgaagaaggctcgccgattgac
cgggaagcatacgaacgcgggacaagcgtttatttggtcgaccgcgtcattccgatgatt
ccgcatcgtttgtctaacggcatttgttcgttaaatccgaaagttgaccgcttgacgatt
tcatgcgaaatggaaatcaatgagcgcggcgaagtcgtcagccacgaaattttccaaagc
gttattcgcacgacggagcggatgacgtattcggatgtgaacaaaattctcgttgacaaa
gatgaagagctgagaaaaaaatacgctccgcttgtgccgatgtttgaattgatggctgaa
cttgcggaaattttgcgcaataaacggatgaagcgcggcgcgattgatttcgattttaaa
gaagcgaaagtgcttgtcgatgaaaacggaaagccgtacgatgtcgtgctgcgcgagcgt
tcggtggcggaacggctgattgaggaatttatgcttgccgcgaatgagacggtcgccgaa
catttccactggctgaacgtcccgtttatttatcgtgtgcacgaagatccgaaaccggaa
aaattgcagcgttttctggagtttatcaccaactttggctatgttgttaaaggaacggga
aaccaaattcatccgcgcgcgcttcaagagattttagaagcagtgcgcggcgagccggag
gaaatgcttatatcgacggtgatgcttcgttcgatgaagcaggcgcgttatgatgctgaa
agcctcgggcattacgggttatcgaccgatttttacacgcattttacctccccgatccgc
cgttatccggatttaattgtgcatcgcctgattcgcacgtatttgattaacgggcaaatg
gatgaacagacacagcaaaaatgggcggaaaagcttccggatatcgcggcacacgcatcg
aatatggagcgccgcgctgtggaagcagagcgggaaacagatgatttgaagaaaacagag
tttatggaagataaaattggcatggagtttgatggaattatcagctccgttacgaacttc
ggcctctttgtggaattgccgaatacgatcgaggggcttgttcatgtcagctacttaacg
gatgactattaccattacgatgaacggagttatgccatgattggcgaacggaccggaaag
gtataccgcatcggcgaccaaattacggttcgcgtcatcaatgtgaacaaagacgagcgg
atcgttgactttgagatcgtcgggatgaaagaccgccgccgtaaagagccaaaacatgcc
cctgtcgtgatcgaggggaaaaaacgaaaaaagcgcaataaagacgaaaaaacgaaaaaa
gcaaaaaaattttatgaagatattccaaagctaaaggcgaaaaagaagaagaaaaagaaa
aaatga
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