Geobacillus sp. Y4.1MC1: GY4MC1_1309
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Entry
GY4MC1_1309 CDS
T01348
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gmc
Geobacillus sp. Y4.1MC1
Pathway
gmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GY4MC1_1309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmc03019
]
GY4MC1_1309
03400 DNA repair and recombination proteins [BR:
gmc03400
]
GY4MC1_1309
Enzymes [BR:
gmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GY4MC1_1309
Messenger RNA biogenesis [BR:
gmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GY4MC1_1309
DNA repair and recombination proteins [BR:
gmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GY4MC1_1309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ADP74112
UniProt:
A0A7U4DKI6
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All DBs
Position
1287461..1288960
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AA seq
499 aa
AA seq
DB search
MVTLEQLLYEKFGYSSFRKGQREIIEDILRGYDVLAMLPTGGGKSLCYQLPAYVLKGSVL
IISPLVSLMEDQVQQLRQRGEKRVIAFNSFLETEVKRKAIERLHEFRFIYVSPEMLQSER
LLHALMNVRISLFVVDEAHCISQWGYDFRPDFLKLGEIRKRLGSPTCLALTATAPPEVTD
DIVHILQLQPLRRHIYSVDRPNIAIKVEKTEFVQEKVKKLFDYVKMLQGPGLIYFSSRQW
AETAARQLQGEGIERVAYYHGGMDSEQRMLVQQQFLRGQLEIVCCTSAFGMGVNKENIRF
VIHFHMPGQMEAYLQEIGRAGRDGNKSIAILLYTHGDEDMVQSLMETELPTDVQVKRLCE
SLSLYGTAPNSLELQMSECSLTDVQKRILTYFLETEGVASSPRMLTEQEAADLYEKLMKK
IESRRQWKRKKLREMIKWVFHRSCRREFIVRAFQQSLTNKPDLCCDQCGFPLDGYLRVEK
EKQDFHFHGWQTELKRIFF
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacattagagcagttgctttacgaaaaattcggctattcctcttttcgaaaaggg
cagcgggaaattattgaagacattttgcgcggatatgatgtattggcgatgctgccaacc
ggtggaggaaaatcgctttgctatcagcttcccgcatatgttttaaaaggcagtgtgtta
attatttcaccgctcgtttcgctgatggaagaccaagtgcagcagcttcggcaacggggg
gaaaagagagtcatcgcttttaatagttttttagaaacggaagtaaagagaaaagcgatc
gaacggctgcatgaatttcgctttatttacgtttccccggagatgctgcagtcggaacgg
ctgcttcacgcgctgatgaatgtccgcatttccttgtttgtcgtcgacgaagcacattgc
atttcccagtgggggtacgattttcgccctgattttttaaagttgggggaaatccgcaag
cgcctcggctctccgacttgtttggcgctgacagccactgcgccgccggaggtgacggac
gatattgtgcatattttgcagcttcagccgctgcgccggcacatttactctgttgacagg
cctaatatcgcgatcaaagttgaaaaaacggaatttgttcaagaaaaagttaaaaagctg
tttgattatgtcaaaatgttgcaaggcccggggctaatttatttttcaagccggcaatgg
gcagaaacagcggcgcggcagctgcaaggggagggaatcgagcgggtcgcctactatcac
ggcggaatggattccgaacagcggatgctcgtccagcagcaatttttgcgcggccaattg
gaaattgtttgctgtacgagcgcatttggcatgggagtgaataaggaaaatattcgtttt
gttattcattttcatatgcctggccaaatggaagcgtatttgcaagaaattggaagggcg
gggcgcgatggaaacaagagcattgcgattttactgtatacccatggcgatgaggacatg
gtacaatctcttatggaaacagaattgccgacagatgtgcaagtgaagcggttatgcgaa
agtttgtcattatatggaacggcaccgaatagtctggagctgcaaatgagcgaatgttcg
ttgacagatgtacagaaacggattttgacatattttttggaaacagaaggagtcgcttct
tccccccggatgctgacggaacaagaggctgcggatttgtatgaaaaactaatgaagaag
atcgaatcgcgcagacaatggaaacgaaaaaagctgagagaaatgataaaatgggttttt
caccgttcatgccggcgggagttcatcgttcgcgctttccagcaatcattgacgaataaa
ccggatttatgctgcgaccagtgcggatttccgcttgatggctacttgcgcgtggagaaa
gagaaacaggatttccattttcatggctggcaaacggaattaaagcgaattttcttttaa
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