Geobacter metallireducens: Gmet_0620
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Entry
Gmet_0620 CDS
T00295
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gme
Geobacter metallireducens
Pathway
gme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gmet_0620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gme03021
]
Gmet_0620 (rpoC)
03400 DNA repair and recombination proteins [BR:
gme03400
]
Gmet_0620 (rpoC)
Enzymes [BR:
gme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gmet_0620 (rpoC)
Transcription machinery [BR:
gme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gmet_0620 (rpoC)
DNA repair and recombination proteins [BR:
gme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gmet_0620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Phage_DsbA
ArnB_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABB30862
UniProt:
Q39Y12
LinkDB
All DBs
Position
691466..695644
Genome browser
AA seq
1392 aa
AA seq
DB search
MEDFFSFFDKPKDPLHFSAIRISVSSPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDISLKDLEKVLYFEAYAVTDPKNTGMAMAEVLSEDRYLKALEEHNYQFEAGM
GAAAIRDCLKAIDLDQLAEQLRQEMIEATSEAKRKKTAKRLKVVEAFKESGNRPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKERPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTRERHFAKGDGKIFASPEEVRIAYDAG
EVDLQARISVRMKNILSAASEQPAIIETTVGRILLREILPEMVPFSSINKVMSKKELVNL
IDVCYRLAGNKETVILADRLKETGFRYSTLAGISICMNDMVIPEGKSAIIDSANDEVKEI
QNQYTEGLITDGERYNKVIDIWAKATEDIAKQMLDNLSKDTILSPDGQEVKIPSFNAIHM
MADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITETDCGTLDGLTVTSLTEGGEVIEQIGDRILGRVA
LDDILDPVTGDVLVPANQEIDETLVKRIEDAGIERVKIRSVLTCQSRRGICAKCYGRDLA
RGHIVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRHAEQTSLEARTEGRVKFININ
SVVNIEGHHIVMNRNGEVAIIDETGREREKYGIVYGAKIKFGPDQVVKPGETLAEWDPYT
MPILTEVAGRVKFGDIVEGVTMEEQLDEVTGLSRKVIIESRDADKRPRIAIKASDPESAS
GGSTIGRYYLPVGANISVAEDSFVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPK
DFAVITEIDGVVTFGKDAKGKRKVIVTPELGEPKEYLIPKGKHISVHENDYVRAGEPLMD
GSSNPHDILRVLGIKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIKEVGDT
NLLIDDQLERWVFEEENERVIAKGGRPAIAEPLLLGITKASLSTESFISAASFQETTKVL
TQAAIEGKVDQLRGLKENVIMGRLIPAGTGLSRYRNLKLVAEQAELLEPVAVAPPAVEED
YPEDDMLDDIEE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
ttggaagattttttcagctttttcgataaaccgaaggaccccctccacttctcggcgatc
cgcatctccgtttcttcaccggagaagattcgggagcgttcgttcggcgaggtaaagaaa
cccgaaaccatcaactaccggaccttcaagccggagcgtgatggtctgttctgcgcgaaa
atctttggccccaccaaggactacgaatgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgaaaagtgtggcgtcgaggtcatcccctcaaaggttcgtcgtgag
cgcctggggcatatcgacctcgccactcccgttgcccacatctggttcctcaagtcgctt
ccctcgcgaatcgggaacctgcttgacatatcgttgaaagaccttgagaaggttctttac
ttcgaggcctatgcagttaccgatccgaagaacaccggaatggccatggccgaggttctc
tccgaagaccgttacctgaaggcccttgaggagcacaattaccagttcgaggcaggtatg
ggggcagcagccatccgtgactgcctcaaggccatcgatctggatcagcttgccgaacaa
ctccgccaagagatgatcgaagcaacgagcgaggcgaagcgtaagaagaccgccaagcgg
ctcaaggttgtggaggccttcaaggagtccggcaaccgtcccgagtggatgatccttgag
tgcatcccggtccttccgcccgagttgcgtcccctggtccccctcgacggcggacgcttt
gcgacgagcgatctcaacgacctctatcgtcgcgtaatcaaccggaacaaccgcctcaag
cgcctcatggaactacaggcccccgaggttatcatacgcaacgagaagcggatgctgcag
gaagccgttgacgccctctttgacaacggtcgccgcggccgtgccattgcaggccctaac
aagcgccccctcaagtccctctccgacatgctcaagggaaaatcaggccgtttccgccag
aacctcctcggcaagcgggtcgactactctggccgttccgttattgttgtgggaccggag
cttcgcctccaccagtgcggtctccccaagaagatggccctggagctcttcaagccgttc
atctacaacaagcttgaggagcggggcttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagcgtccggaggtctgggacgttcttgaagaggttatcaaagaacatccc
gttatgctcaaccgtgcccctactctgcaccgcctcggcatccaggcctttgagccggtg
ctgatcgaaggaaaggccatccagctccaccccctcgtgtgtaccgcctttaacgcggac
ttcgacggcgaccagatggcggtccaccttcctctttctatcgagagccaggtggaggcg
cgggtgctcatgatgagtaccaataacatcctgtctccggcgcatggcaagccgatcatc
gtaccgtcgcaggatatggttctcggtatctactacatgacccgggagcgtcatttcgcc
aagggggacgggaaaatcttcgcgtctccggaagaagtgcggatagcgtatgatgccggc
gaggttgacctccaggcacgtatcagcgtccggatgaaaaacattctctccgctgcgtct
gaacagccggccatcatcgagacgacagttggtcgtatcttgcttcgtgagatactcccc
gaaatggtccccttctcttccatcaacaaggttatgagcaagaaggagcttgtgaacctg
atcgatgtctgctaccgccttgccggcaacaaagagaccgtcatcctggccgaccggctc
aaggagaccggattccgctactcgaccctggcgggtatttccatctgcatgaatgatatg
gtgatccccgaagggaagtccgcaatcatcgacagcgccaacgacgaggtgaaggagatc
cagaaccagtataccgagggtctcatcaccgacggggagcgctacaacaaagttatcgac
atctgggccaaggctacggaagacatcgccaagcagatgctcgacaacctttccaaggac
acgatcctctcccctgacggccaggaagtgaagattccttccttcaacgcaattcacatg
atggccgactcgggcgcgcggggctctgctcagcagattcgtcagctggcgggtatgcgg
gggctcatggcgaagccgtccggcgaaatcatcgagactcctatcaccgccaacttccgg
gagggactgaacgttcttcagtacttcatctcgacccacggtgcccggaagggtcttgcc
gacacggctctcaagaccgcgaactccggttaccttacccgtcgtctggttgacgtggca
caggacgccattatcaccgagacggactgcggcacgctcgacggccttaccgtcacatcc
ctgaccgagggtggcgaagtcattgagcagattggagatcgcattctcggccgcgttgcc
cttgacgatatccttgatccggtaactggcgatgtgcttgttcctgccaaccaggaaatc
gatgaaacgctcgtgaagcgcatcgaggatgctggcatcgagcgggtcaagatccgctcc
gtgctcacctgccagagcagacgcggcatttgcgccaagtgctacggacgtgaccttgcc
cgcggacatatcgtcaatatgggggaagcggttggcgtcatcgctgcccagtccatcggc
gagccgggtactcagctgaccatgcgtaccttccatatcggtggtacggcatcgcggcat
gcagagcagacctcgcttgaagcccggacagaaggccgggttaagttcatcaatataaac
agcgtcgtcaatattgagggacaccatatcgtcatgaaccgcaacggcgaagttgccatc
atcgacgaaacgggtcgtgagcgcgaaaagtacggcattgtctacggcgccaagatcaag
ttcggccctgatcaggttgtgaaaccaggcgaaacgctcgccgagtgggacccttacacc
atgccgatcctcaccgaggtcgctggacgcgttaagttcggggacattgttgaaggggta
accatggaggaacaactcgacgaggtgaccggcctttcccgtaaggttatcattgagtcg
agggatgctgacaagcggccgcgtatcgccataaaggcatcggatcccgaatccgcgtcc
ggcgggagcaccatcggtcgttactatctgccggtcggtgccaacatttccgtggccgaa
gactcgttcgtcaatgccggtgatgtaattgcgaagattccgcgtgaaacgacgaagacc
aaagatatcaccggtggtctcccgcgggttgccgagctcttcgaagctcgcaagcctaag
gacttcgccgtgataaccgagattgacggtgtcgtcaccttcggcaaggatgccaagggg
aagcgcaaggtcattgttactccggagttgggtgaacccaaagagtatctgatccccaag
ggcaagcatatcagtgtacatgagaacgattacgtacgggcaggcgaacccctcatggac
gggtcctccaacccccacgacattcttcgggtgttgggtatcaaggaactcgcaaagtac
ttggtcgacgaggttcaggaggtttaccgactccagggcgtcaagatcaatgataagcac
attgagaccattgttcgtcagatgctccgcagggttcggatcaaggaagtgggggatact
aacttgctcattgatgaccaactcgagcgctgggtcttcgaggaagagaacgagcgggtt
attgcaaagggggggcgtcccgccattgccgaaccgcttcttcttggtatcaccaaggca
tcgctctcgacggaatcattcatctctgctgcatctttccaagagacgacaaaggtgctg
acccaggcggccatcgagggaaaggtggatcagcttcgcgggctcaaggaaaacgtcatt
atgggacggcttattcctgctggaacaggtctgtctcgttatcggaacctcaagctcgtc
gccgagcaggcagaactgttggaacccgttgccgttgcgcctcccgctgttgaggaggat
taccctgaagatgacatgcttgacgatattgaggaatag
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