Geobacter metallireducens: Gmet_1215
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Entry
Gmet_1215 CDS
T00295
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gme
Geobacter metallireducens
Pathway
gme03030
DNA replication
gme03430
Mismatch repair
gme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gmet_1215 (dnaE)
03430 Mismatch repair
Gmet_1215 (dnaE)
03440 Homologous recombination
Gmet_1215 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gme03032
]
Gmet_1215 (dnaE)
03400 DNA repair and recombination proteins [BR:
gme03400
]
Gmet_1215 (dnaE)
Enzymes [BR:
gme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Gmet_1215 (dnaE)
DNA replication proteins [BR:
gme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Gmet_1215 (dnaE)
DNA repair and recombination proteins [BR:
gme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Gmet_1215 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABB31452
UniProt:
Q39WC2
LinkDB
All DBs
Position
1366263..1369730
Genome browser
AA seq
1155 aa
AA seq
DB search
MSFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVK
PIIGSEVYIAPGSRFVKEVKGGEAGAGYHLLLLCENMTGYRNLSKLVSVGFKEGFYYKPR
IDKEVLAQYSEGLICLSACLKGEVAYLCERDRMEEAIGVARWYADLFPDRYYIELQENGL
AEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSARMRFST
DEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPPVGQTLDQMLED
AARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIVADFINWAKD
HGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDVDFCQDRREE
VIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVPEVLGIKLKD
AIAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVLEEFCPVYKDQK
TGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDIAALRDDDRASY
DLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSGMVDDFIDRKHG
RKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRAMGKKDPAEMAK
QRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYPVEF
LAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIRFGLGAVKNVGE
GAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGGRRSQLMSALED
AMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLKLGLEKEALGFF
ITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKKGDRMAFATLED
LLGSVEVVVFPEAFAAGSEYLKSDDPLLISGTIDKGEKSIKIMANEVMLLRDVSSRETKR
VIFNLVGDGLDRSRLETLKGIMRRHPGSCKTLLAIEIPAQCRATIALSDSYQVAPTEELS
LEVKNLFGYHAVSFE
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgttcacctccatctccatacccagtattccctcctcgatggcgcgatacgc
ctcggcgatctgataaagaaagccaaggataccgatatgcccgccgtggccatcaccgac
cacggggtgatgttcggcgccatggagttctacctcaagtgcaaggacaagggggtgaag
ccgattatcggctccgaggtctatatcgcccccggctcccgcttcgtgaaagaggtgaag
gggggagaggccggcgccggttaccacttgctccttctctgtgagaacatgaccggctac
cggaacctgtcgaagctggtctccgtcgggttcaaggagggcttttactacaagccccgc
atcgataaggaggttttggcccagtactccgaggggctcatctgtctctccgcctgcctg
aagggtgaggtggcctatctctgcgagcgggaccggatggaggaggcgattggggtggcc
cgctggtacgctgacctctttcccgaccgctactacatcgagcttcaggagaacggtctt
gcggagcaggacaaggccaacaaggggctcctggaggtggcgcgggaggtgggactgccg
ctggtggccaccaatgactgccactacctgaaccgggaggatgcccgcgcccatgaggtg
ctcctctgcatacagaccggcaagaccatgaacgattcggcgcggatgcgcttttccacc
gacgagttttacgtgaaaacccctgaggagatggccgccgcgttccactacgcgccggaa
gccgtttccaataccgtgaagattgccgaacggtgcaacctcgactttgatttcaagacc
tactatttcccccaattcgatccccccgttgggcagaccctcgatcagatgctggaggat
gcggcccgcaaggggcttgagttccgtctcaaggaaatcaggctcaaaaaccccgacatg
tccccggagcaggagcagaagtactgggagcggttgcgcatcgagctggactgcatcacg
cagatggggttccccggctacttcctcatcgtggccgacttcatcaactgggccaaggac
cacggcatccccgtggggccgggacggggctcggcggccggctccctggttgcctattcc
atccggatcactgacctggatccgctcccctacaatctcctcttcgagcgcttcctgaac
ccggaacggatatccatgcctgatatcgacgtggacttctgccaggaccgccgcgaggag
gttatccactacgtcaccgggaaatacggccgcgaccaggtctgccagatcatcaccttc
gggaccatgtctgcccgggccgtcatccgcgacgtggggcgcgccctggacatgacctac
ggcgatgtggacaagatcgccaagctggtgccggaggtgctcggcatcaagctcaaggac
gccattgcccaggagccccgcctgaaggaggcgtccgaggccgactcccgcgtgaaggag
ttgctggagattggcctgcgcctcgaagggctcgcccgccacgcctccacccacgcggcc
ggcgtcgtggtggcccccaaggtgctcgaagagttctgccccgtctacaaggaccagaag
accggctccctcaccacccagtactccatgaagtacgtggagaaaatcggcctcgtgaag
ttcgactttctggggctcaagaacctgacggtcatccataacgcggtgaagatcattcgg
gccggtaaggaccccaacttcgacatcgcggccctgcgggacgacgaccgggccagttac
gatctcatctctgccggcaacaccaccggcgtcttccagctcgaatccagcggcatgaag
gatatgctggtaaagctgaagccttcctgcttcgaggacgtcattgccgcctgcgccctc
taccggccgggccccctcggctcggggatggtggacgacttcatcgaccgcaagcacggc
cgcaagaaggtggtctacgacctgccgcaactggagccgatcctcaaggacacctacggg
gtcatcgtctaccaggagcaggtcatgcagatcgcccggaccctggcgggctactccctg
gggggcgccgacctgctgcggcgcgccatgggtaagaaggacccggcggagatggccaag
cagcgggacatcttcctggaaggggccaagaacggtggggtcgatctccagaaggcggga
gccatcttcgacctcatggcaaagttcgccgaatacggcttcaacaagtcccactcggct
gcctacgcccttgttgcctaccagaccgcctatctcaaggcccactacccggtggagttc
ctggccgctctcctcaccgaggatatggggaacaccgacaaggtggtgaagaccatttcc
gactgccgggagatggggatcgagatcctcccccctgacatcaacgactcccatctctcc
ttccgtgttctgggaaactccatccgcttcggcctcggggccgtgaaaaacgtgggagag
ggggccatcgaggcgattatcgaggcgcggcaagagggagatttcaaggatctcttcgac
ttctgcgagcgggtcgatctccacaaggtcaacaagcgggtggtggaatccctcgtaaag
tgcggtgccttcgactccaccggcggccgccgctcccagctcatgtcggccctggaggat
gccatggccatcggccagaagatccagcaggagcgggagagcgcccaggtctccctcttc
ggtgtcgaagagatcgtccggaccaacggcaacggcaaggggaaggtgcagctccccgat
atccccgaatgggacgacaagctgaagctgggcctggagaaggaggccctcggcttcttc
atcaccggccaccccctggggcgctacgagaaggaaatcaagcgcttcgccaacgtggat
actgccaccctcgacgagcgcgccgacaagagcgaggttaagctctgcggcatcgtcacc
tccctcaaggagctgattaccaagaagggggaccggatggccttcgccaccctggaggac
ctgctcggttccgtggaggtggtggtcttccccgaggcttttgccgccgggtccgagtac
ctcaaatccgacgatccgctccttatatcgggcaccatcgacaagggggagaagagcatc
aagatcatggccaatgaggtgatgctcctgcgagacgtgagcagccgggaaacgaaacga
gtgatctttaatcttgtgggcgacggcctcgaccggagccgcctggagaccctcaagggg
atcatgcgccgccaccccggcagctgcaagacgcttctggccatcgagattccggcccag
tgccgggccaccatcgccctttccgattcgtaccaggtggcccccaccgaggaactctcc
cttgaagtgaagaacctcttcggctatcatgccgtgtcttttgagtaa
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