Geobacter metallireducens: Gmet_1349
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Entry
Gmet_1349 CDS
T00295
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gme
Geobacter metallireducens
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gme03019
]
Gmet_1349 (hrpB)
Enzymes [BR:
gme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Gmet_1349 (hrpB)
Messenger RNA biogenesis [BR:
gme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Gmet_1349 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
CON_HrpB
ResIII
nSTAND3
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABB31583
UniProt:
Q39VZ1
LinkDB
All DBs
Position
1508874..1511402
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AA seq
842 aa
AA seq
DB search
MLLPIEDILPQLTSSLQTHNSVVIQAPPGAGKTTRVPLALLDAPWLRGKGIVMLEPRRLA
ATNAARWMASILGEEAGGTVGYTIRFDRKVSRQTRVEVVTEGVLTRRLQTDPLLEGVGAV
IFDEFHERSIHADLALALCRDVQQGLREELRIIVMSATLEAAPVAGLLGDAPIITSEGRS
FSVEIRHLPEDSRDPLPIAVSRAIRTALAVTEGDILAFLPGVGEIRRCHQFLQEGEALHS
APLIAPLYGDLPFAEQERAILSADRRKVVLATNIAETSLTIEGVRVVIDSGFCRRLRFDP
GSGLDRLVTERISAASATQRAGRAGRLGPGTCFRLWSEHTQRTLIPADPPEIATSDLTPV
ALDLAAWGVTDASTLSWLTPPPKSSLEEGRQLLVQLEALDRHGMITEVGRRMAELPVHPR
LAHMLTRAVGRGVGPLACDVAAIMSERDLVKASGGTALERSESDMLVRVEVLNGWRKGRR
FAGGDAATCRTVDRSAQHLRRLLNIGKEHAVVGADAETVGLLLAWAYPDRIALRRGDGGR
RYLLAGGRGALLSERSSVHDEPLLVAHVVERGERGDDLIRQASVLTLETFRREFSDGIVT
GRNVFWDEREGRVVSCEEERFGALVLGSRPSAATADEVRSALVEGIVRGPGLSALSWSTA
ARRFRARVRLMARVFPDEGWPNLSDEALLATLGEWLGPQLDGVRRLADAAAVDLLPPLQG
LLPWNLLRRLDEGAPTHLVVPSGSRVPIDYGDDGTPTLAVKLQEMFGLAETPTVAWGRVP
VVVHLLSPAGRPLQVTADLRGFWNGAYQEVKKEMRGRYPKHPWPDDPWTAIPTRRTKGHE
RK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcttcttcccattgaagacatcctgcctcagctgacatcctcccttcagacccacaat
tccgtggtcatccaggctccgcccggagccggcaagacgacgcgtgttccccttgcactc
ctggacgccccatggctccgggggaaggggattgtcatgctcgagccgcgacggctcgcg
gccaccaatgccgcccgctggatggcgtccatccttggcgaggaagcgggagggacggtg
ggctacacgatccgcttcgaccggaaggtgtcgcgccaaacccgggtggaggtggttacc
gagggagtgctcactcgccggctccagacagacccgctcctcgagggggttggcgcggtg
atcttcgacgagttccacgagcggagcatccatgcggacctggccctggccctctgtcgc
gacgtgcagcagggattgcgggaggagctgcggatcatcgtcatgtcggcgaccctcgaa
gcggcgccggtggcagggcttctgggggacgcgccgatcattacgagcgaggggcggagt
ttttccgtggagatccgccaccttcccgaggattcccgcgaccccctcccgattgccgtc
tcccgcgccattcgcacggcccttgctgtcacagagggggacatcctcgcctttctgccg
ggagtaggggaaatccggcgttgtcaccaattcctgcaggaaggggaagcgctccattct
gcgcctctcattgctcccctctatggcgacctcccctttgccgaacaggaacgggccatt
ctttccgccgaccggcgcaaggtggtgctcgccaccaatatagcggaaacgagtctcacc
atcgaaggggtgcgggtggtcatcgacagcggtttttgccgccggctgcggttcgatccc
gggtcggggcttgaccggctcgtcacggagcggatttcggccgcctccgccacccagcgg
gcagggcgggccggccggctcggtcctggcacctgcttccggctctggtccgaacacact
cagcggaccctcattcccgccgaccctcccgagatcgccacctccgacctgacaccggtg
gcccttgacctggctgcctggggggtgaccgatgcctccaccctttcgtggctcacgccc
cctccgaaatcctctttggaggaggggcgacagctccttgttcagcttgaagccctcgac
cgccacggcatgatcaccgaggttggccgacggatggcggagctgccggtccatccccgc
ctcgcccacatgcttaccagggccgtcgggaggggcgttggtccccttgcctgtgacgtg
gcggcgatcatgtcggagcgtgacctcgtgaaggcttccggagggacggcgttggagcgg
agcgaaagcgacatgctcgttcgggttgaggtgctgaatgggtggcggaaggggcggcgc
tttgcagggggggatgccgcgacctgccgcaccgtcgaccgctctgcccagcatctgcgc
aggttgctcaacatcgggaaggagcatgcggttgtcggcgcggatgccgaaacggtgggc
ctcctgctcgcctgggcctacccggatcgaatcgcgctgcgccgcggtgacggcgggcgc
cggtatctccttgccggaggacgcggggcgcttctctccgaacgaagctcggtccatgac
gagccgcttctggtggcccatgtggtggagcggggggagaggggagacgacctgattcgc
caggcaagtgttctgacgctggaaaccttcagaagggagttctccgacggcatcgtcacc
gggaggaacgtgttctgggatgagcgggaagggagggtggtaagctgcgaggaggagcgg
ttcggtgccctcgtcctcggaagcaggccatccgctgccacggctgacgaggtgcgaagc
gcactggtggagggaatcgtgagggggcccggcctgtcagcccttagctggtccacggcc
gcacgccggttcagggcgcgggtgcggctcatggcccgcgtttttcccgacgagggatgg
cccaatctctccgatgaggccctcctggcaacccttggcgagtggctgggacctcaactg
gacggggtgcggcgacttgccgacgcggctgcggtggacctgctccctcccctgcagggg
ctcctcccctggaatctgctccgccgcctcgatgaaggggcgccgacccatctggtggtt
ccgagcggttcgcgggtccctatcgattacggagatgacgggacaccgaccctggcggtg
aagctccaggagatgttcggccttgccgagacccccaccgtggcgtgggggagggtgccg
gtggttgtccatctcttgtcgccggctggccgcccccttcaggtgaccgcagacctgcgg
gggttctggaacggggcctaccaggaggtgaaaaaggaaatgcggggacgctacccaaag
cacccgtggcccgatgacccgtggactgccatacccacgcgcaggacaaaggggcatgag
agaaaatag
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