Geobacter metallireducens: Gmet_1386
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Entry
Gmet_1386 CDS
T00295
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gme
Geobacter metallireducens
Pathway
gme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gmet_1386 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gme03019
]
Gmet_1386 (rnr)
03016 Transfer RNA biogenesis [BR:
gme03016
]
Gmet_1386 (rnr)
Enzymes [BR:
gme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Gmet_1386 (rnr)
Messenger RNA biogenesis [BR:
gme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Gmet_1386 (rnr)
Transfer RNA biogenesis [BR:
gme03016
]
Prokaryotic type
tRNA degradation factors
Gmet_1386 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1CSD-TOTE-2
Rrp44_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABB31620
UniProt:
Q39VV4
LinkDB
All DBs
Position
1550693..1552972
Genome browser
AA seq
759 aa
AA seq
DB search
MKRNRETVQAVIRERGGSAPFRELMLAFGVTKGERQSFKGFVDKLVTDGHLVRLRGNRYA
LADGENLVTGRLTCHPDGYGFVIPEGGGDDVYIPARALAGSMHGDTVEVRVETFKAGGKK
EGRIVRTVTRGQTRVVGRFEQLKGFGVVVPDETRISQQIVISQQGIGRAKGGQTVVAEIT
AYPTEKRRPEGRIVEVLGWPDDPEVEVRTIIAKHGLPFEFPAEVLDEARAVPQAIGEKDL
QGRTDLREIVTVTIDGETARDFDDAVAVRKERGGNIRLWVSIADVSHYVKPDAPLDREAY
LRGTSVYFPDRCIPMLPEELSNGICSLNPRVERLTMTAEMLFTRSGTMKEATFYPSVIKS
DARLTYTIVKKILVDGDAEAMAAHQELVPHLEVMRELAQSLTEKRRKRGSIDFDLPEPQI
ILDLQGETVDIIQAERNLAHRIIEEFMLAANEAVASHIEAKGIPSLYRVHEPPDPAKLID
FQEFIFNFGFHFRMEGDRVEPAEIQRLLVETEGTPEERMINQVLLRCMKQARYSHENLGH
FGLAARCYTHFTSPIRRYPDLVVHRILKALLAGKITDKEIARLETTLPETAEQTSRRERV
AMEAEREIVALKKAQFMLQKIGEDFDGYITGVTSFGLFVELTEIFVEGMVHISTMGDDYY
RYVEKQHSLVGERTKETYRIGDKVRVTVAAVSIEKKQVEFVLAGLHERRPGASSPPGSEE
YPRIAVTGKRPRVLEERRRQSKGDKKGSGKGKGPRGRRR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggaatcgggaaacggtgcaggcggtgatccgcgagcggggcggttctgcccct
ttccgggagctgatgctggctttcggggtgaccaagggggagcggcagagtttcaagggg
ttcgtggacaaactcgtcactgacggccatctcgtgcgactcaggggaaaccgctatgcc
ctggccgatggggagaatctcgtgaccgggcggctcacgtgccacccggacggctacggt
ttcgtcattcccgaagggggaggggacgacgtctatatcccggcccgggcccttgccggg
agcatgcacggtgacacggtggaggtgcgggtcgagaccttcaaggccggcggcaagaag
gaggggcggatcgtgcggaccgtgacgcgggggcaaacccgtgtcgtggggcggttcgag
caactcaagggattcggggtcgtggttcccgatgaaacccgcatcagccagcagattgtc
atctctcagcagggaatcggtcgggccaaggggggacagacggtcgtggccgagatcacc
gcctaccccacggagaagcgcaggcccgaggggcgcatcgtggaggtgctggggtggccc
gacgaccctgaagtggaagtccggaccattatcgccaagcacgggctccccttcgagttc
cccgccgaggtgctggacgaggcccgggccgttcctcaggccatcggggagaaggatctg
caggggcgtaccgatctgcgggagatcgtgaccgtcaccatcgacggcgagacggcccgg
gacttcgacgatgccgtggcggtccggaaggagcggggggggaacatccgcctctgggtc
tccatcgccgatgtctcccattacgtgaagcccgacgcgcccctggaccgggaggcgtac
ctgcgggggacctcggtctactttcccgaccgctgtatccccatgctccccgaggagctt
tccaacggcatctgctccctgaacccccgggtggagcggctcaccatgacggcggagatg
ctcttcacccgcagcggcaccatgaaagaggccactttctacccgagcgtaatcaaaagc
gacgcccggctcacctacaccattgtaaaaaagattctcgtggacggcgatgccgaggcc
atggcggctcaccaggagctggtccctcacctggaagtcatgcgggagttggcccagagc
ctcacggagaagcggcgtaagcgggggagcatcgactttgatctccccgagccccagatt
atcctcgatctccagggggagaccgtcgacatcatccaggccgagcggaacctggcccac
cggatcatcgaggagttcatgctggccgccaacgaggcggttgcatcccacatcgaggca
aagggaatcccctccctctaccgggtccacgagccccctgacccggcaaagctcatcgac
ttccaggagtttatcttcaatttcggcttccacttccggatggagggggaccgggtggag
ccggcggagatccagcggcttctggtggagaccgaggggacgccggaggagcggatgatc
aaccaggtgctcctgcggtgcatgaagcaggcccgctacagtcacgagaacctggggcat
ttcgggcttgcggcccgctgttacacccacttcacgtcccccatccgccgctaccctgac
ctggtcgtccaccgcatcctcaaggcgctcctggccgggaagattaccgacaaggagatc
gcacggctggagacaaccctccccgaaacggcggagcagaccagccggcgggagcgggtc
gccatggaggcggagcgggagatcgtggccctcaaaaaggcccagttcatgctccagaag
atcggggaggacttcgacggctacatcaccggggtcacgtccttcggcctttttgtggag
ctgacggagatattcgtggaggggatggtccacatctccaccatgggtgacgactactac
cgctatgtggagaaacagcattccctggtgggtgagcggacgaaggagacctaccggatc
ggcgacaaggtgcgggtgaccgtggcggcggtgagcatcgagaagaagcaggtcgagttc
gtgctggccgggcttcatgagcggcggcccggtgcctcgtcgccgccggggtcggaggag
tacccgcggattgccgtcacggggaagcgcccccgggttcttgaagagcgacgacgccag
tcgaagggagataagaagggaagcggcaaggggaaggggccacgcgggaggcgccggtaa
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