Geobacter metallireducens: Gmet_2573
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Entry
Gmet_2573 CDS
T00295
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gme
Geobacter metallireducens
Pathway
gme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gmet_2573 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gme03019
]
Gmet_2573 (rhlE-2)
Enzymes [BR:
gme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gmet_2573 (rhlE-2)
Messenger RNA biogenesis [BR:
gme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gmet_2573 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
ABB32792
UniProt:
Q39SI2
LinkDB
All DBs
Position
complement(2921609..2922964)
Genome browser
AA seq
451 aa
AA seq
DB search
MEFKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPIL
HRLAQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQKLKAG
AEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKRQTLL
FSATMPIDIRVLAQEILRDPVTVQVGTVAPAVTVTHALYPVEQHLKTPLLLELLRHTDTE
SVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAA
RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRTIERKLNT
SLERRTMAGFDYSVPAPKKDTEFARPPRQPMPSRRPTEAKKGGARQGASHQPGSAKPAEG
RRSQPQAAKANPARTAGTGGQRTGQQRRQPR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaggagttcaacctccacccccaggttatggccggtgtcacggcggcgggg
tacacgacccctacgccgatccaggcccaggcgataccgactgtcatggaggggcgcgac
gtcatggggctcgcccagaccggcacgggcaagaccgcagcctttgcgctgccgatcctg
catcggctcgcccagggagagcgggggcgcgtccgggccctggtcattgcccccacccgg
gagctggccgagcagatcaatgacagcttcgtcaccctggggcgccagacccggctgcgg
agtgtcaccgtctacggcggcgttaacgtcaacccccagattcagaagctcaaggcgggc
gcggagatcgtcgtggcttgcccggggcggctcctggaccacatggcccaggggaccatc
gacctctcgcacctggaggtgctcgtcctggacgaggcggaccagatgttcgacatgggc
tttctccctgaccttcgccggatcctgaagcagcttccccccaagcgccagaccctcctc
ttctcggccaccatgcccatcgacatcagggtcttggcccaggagatcctgcgggacccg
gtcacggtgcaggtggggaccgtggccccggcggtcaccgtcacccatgccctctacccg
gtggagcagcacctgaagacgccgctcctgctggagctgttgcgtcacaccgacaccgag
tcggtcctcatcttcacccgcaccaagcaccgggccaagcggctgggtgagcaaatggag
aaggccggctacaaggccgcgtccctccaggggaacctctcccagaaccggcgccaggcg
gcactggacgggttccgggacggcaccttccaaatcctcgtggccaccgatatcgccgcc
cgggggattgatgtctcccaggtgtcccacgtcatcaactacgacatccccgacaccgcc
gaggcgtacatccaccgcataggccgcacgggccgggccgcccgcagcggcgacgccttc
accatggtgacgagcgaagatacggccatggtccgcactatcgagcgtaagctcaacacc
tccctagagcgccgcaccatggccggcttcgactacagcgtgccggcaccgaaaaaggac
accgagttcgctcgtcccccccggcagcccatgccgtcccgccgtcccacggaggcgaag
aaggggggagcccgtcaaggtgcatcccatcagccgggaagcgccaaacccgccgagggg
aggcgttcccagccccaagctgcgaaggcaaatccagcccgcaccgccggaaccggtggc
cagcgcaccggccagcagcgccgtcagccccgctga
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