Geobacter metallireducens: Gmet_3530
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Entry
Gmet_3530 CDS
T00295
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gme
Geobacter metallireducens
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gme03016
]
Gmet_3530
Enzymes [BR:
gme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Gmet_3530
Transfer RNA biogenesis [BR:
gme03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Gmet_3530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
ABB33735
UniProt:
Q39PT9
LinkDB
All DBs
Position
3963535..3964089
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AA seq
184 aa
AA seq
DB search
MRLFVAIDLPDEVKRSVADICRGVPGVRWLPPDQLHLTLRFIGEEDDAVAAAIRRGLAEI
TSPPFPLSLQGVGCFPSPRRPRVLWVGLSGGAPLQQLQQKVEAAMVAAGILAEERPFSPH
ITLARLREHREGDVAPFLARNASFHCEPFTVDAFHLYSSILAAKGAIHRHEASYPLAGRM
ETAG
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgttcgtggcaatcgatcttcccgacgaggtcaaacggtcagtggctgatatc
tgccggggagtccccggagtgcggtggcttccaccggaccaactccatctgaccctccgg
ttcatcggcgaggaggacgatgccgtcgctgcggcgatccgtcgcggcctggcagagatc
acctctccccccttccccctttccctccagggggtgggctgcttcccttccccccggcgt
ccgcgggttctctgggtggggctcagcggcggagcccccctccagcagctccagcagaag
gttgaggcggcgatggtagcagccggcatccttgccgaagagcgccccttctcaccccac
atcaccctggcccgcctgagggaacaccgggagggtgacgtcgcccccttcctggcgcgg
aatgcctccttccactgcgagccgttcacggtcgacgcattccacctctattcgagcatc
cttgccgcaaagggggccatccaccggcacgaggcgagctatcctcttgcagggcgaatg
gagacggctggctga
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