Globicephala melas (long-finned pilot whale): 115839928
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Entry
115839928 CDS
T11080
Symbol
PCDH7
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
115839928 (PCDH7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmf01009
]
115839928 (PCDH7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmf04515
]
115839928 (PCDH7)
Protein phosphatases and associated proteins [BR:
gmf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115839928 (PCDH7)
Cell adhesion molecules [BR:
gmf04515
]
Cadherins
Protocadherins
115839928 (PCDH7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Mid2
Cadherin_pro
LYRIC
KIAA1549
MLANA
EphA2_TM
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
115839928
NCBI-ProteinID:
XP_030688097
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All DBs
Position
5:56221992..56629967
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AA seq
1255 aa
AA seq
DB search
MLRMRTMGWARAWCLGCCLLLPLSVSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTG
SGEVTFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPS
QSWVDLFEGRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERY
ELLQEPGGGSSGGEGRRAGPADSAPYPGGGGNGASGGGPGGSKRRLDAPEGGGGTSTGGR
SSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITD
VNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRL
DETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
GRIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQ
NKKKYFLHTSAPLDYETTREFNVVIVAVDSGSPSLSSNNSLIVKVGDTNDNPPVFGQSVV
EVYFPENNIPGERVATVLATDADSGKNAEIAYSLDSSVMGIFAIDPDSGDVLVNTVLDRE
QTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGM
VTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDP
PRSATATVSLFVMDENDNAPTVTLPRNVSYTLLPPSSNVRTVVATVLATDSDDGINADLN
YSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
ESVSNATVIDSQIARSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVM
ARYCRSKNKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKRNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQA
VQDLPPANTFVGAGDNISIGSDHCSEYSCQTNNKYSKQPFRRVTFSVVSQPQDPHQGSLQ
SCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVAL
TGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDR
NRNLLNKKLTSSYETFSAASFSKNEEANTEDIPLTKTGEYKPSPVNTLTRREVYL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggatgcggaccatggggtgggcgcgcgcctggtgcctgggctgctgtctcctc
ttgccgctctcggtaagcctggcggccgccaagcaactcctccggtaccgactggccgag
gagggcccagcagacgtccgcatcggcaacgtcgcttcggacttgggcatcgtgaccggc
tccggtgaggtgactttcagcctcgagtcgggctcggagtacctgaagatcgacaacctc
accggcgagctgagtaccagcgagcggcgcatcgaccgcgagaagctaccccagtgtcag
atgatcttcgacgaaaacgagtgcttcctggacttcgaggtatcggtgatcgggccctcg
cagagctgggtggacctgttcgagggtcgggtcatcgtgctcgacatcaacgacaacacg
cccaccttcccgtcgcccgtgctcacgctcacggtggaggagaaccggccagtgggcact
ctctacctgctgcccactgccaccgaccgtgatttcggccgcaacggcatcgaacgctac
gagctgcttcaggaacccgggggcggcagcagcggcggcgagggacggcgcgccgggcct
gcagacagcgccccctaccccgggggcggcgggaacggcgcgagcggcggcggcccgggt
ggttccaagaggcggctggacgcaccagagggcggcggcgggaccagcaccggcggccgc
agcagcgtgttcgaactgcaggtggctgacaccccggatggcgaaaagcagccgcagctg
atcgtgaagggggcgctggaccgcgaacagcgagactcctacgagttgaccctgcgtgta
cgcgacggtggcgacccgcctcgctcctcccaggccatcctgcgggtacttatcacagac
gtgaacgacaacagtccccgcttcgagaagagcgtgtacgaggctgacctggcggagaac
agcgccccggggacccccatcctgcagctgcgtgccgccgacctggacgtgggggtcaac
gggcagatcgagtacgtgttcggggcggctaccgagtccgtgcggcgcctgctgcgcctc
gacgagacgtccggctggctcagtgtcctgcaccgtatcgaccgcgaggaagtgaaccag
ctgcgcttcaccgtcatggcccgcgatcgcgggcagccccccaagaccgacaaggccacg
gtggtccttaatatcaaggacgagaacgacaatgtgccgtccattgaaatccgcaagatc
gggcgtatcccactaaaggacggggtggccaacgtggccgaggacgttctggtcgacact
cccatcgccctggtacaggtgtctgaccgagaccaaggcgagaacggagtggtcacctgc
accgtggtgggcgatgtgcccttccaactcaagccggccagtgacacagagggcgaccag
aacaagaaaaagtacttcctgcacacctcggcccctttggactatgagaccacccgggag
ttcaacgtggtcatagtggcggtggactcgggcagtcccagcctctccagcaacaactcc
ctgattgtcaaggtgggagacaccaatgacaacccgcccgtcttcggtcagtcggtggtg
gaggtatattttcccgagaacaacatccctggcgagagggtagccacggtgctggcgaca
gacgcagacagcgggaaaaacgctgaaatcgcctactcgctggactcttccgtgatgggg
atctttgccatcgacccagattctggggacgtcctcgtcaatacggtgctggaccgcgag
cagactgacaggtatgagtttaaagttaacgccaaagacaaaggcatcccggtgctacag
ggcagcaccacagtgattgtgcaggtggctgacaagaatgacaatgaccctaagtttatg
caggacgtctttaccttttatgtgaaagaaaacttgcagcccaacagtcccgtgggaatg
gtcacagtgatggatgctgacaaggggcgcaatgcggagatgagtctgtacatagaggag
aacagtaacattttttccattgaaaatgacacggggaccatttactccacaatgtctttt
gaccgggaacatcagaccacatacacattcagagtcaaggctgtggatgggggagatcct
cccagatccgcaacagctacagtctctctctttgtgatggatgagaatgacaatgccccc
acagttacccttcccagaaacgtttcctacactttactgccaccttcaagtaatgtcagg
acagtagtagctacggtgttggcaacagacagcgatgatggcatcaatgcagaccttaac
tacagcattgtgggagggaatcccttcaagctgtttgagattgattccaccagtggtgtg
gtttccttagtgggaaaactcacccaaaagcattatggcttgcacagattggtggtgcaa
gtgaatgatagtggccagccttcccagtctaccacgactctggtgcatgtgtttgtcaat
gaaagtgtttctaatgcaactgtgattgactcccagatagccagaagtttgcacacccca
ctcacccaggatatagccggtgacccaagctatgaaataagcaaacagagactcagtatt
gtcattggggttgttgctggaattatgacggtgattctaatcatcttaattgtagtgatg
gcaagatattgccggtccaaaaataaaaatggctatgaagccggcaaaaaagatcacgaa
gacttttttacaccgcaacagcatgacaaatctaaaaagcctaaaaaggacaagagaaac
aaaaaatctaagcagcctctctacagcagcattgtcactgtagaagcttctaaaccaaat
ggacagaggtatgatagtgtcaatgagaagctgtcagacagcccaagcatgggccgatac
cgatcagttaacggtgggcctggcagtcctgacctggccaggcattacaaatctagttcc
ccattgcctactgtccagcttcacccccaatcaccaactgcaggaaaaaaacaccaggcc
gtacaagatctaccaccagctaacacatttgtgggagcaggagacaacatttcaattgga
tcagatcactgctctgagtacagctgtcaaaccaataacaagtacagcaaacagccattt
cgtagagtgacgttttctgttgtgagtcagccccaggacccacatcaggggtcactgcag
agttgctatgacagcgggctggaggagtcagaaacaccaagcagtaagagttcatcaggg
ccaaggctgggtgcccttccactcccagaggacaactatgaaaggaccacgccggatggc
agtgttggtgaggcagagcatatggaaaatgattcaagacctcttccagatgtagcccta
actgggaagtgtacccgtgagtgtgatgagtatggccactcagactcctgctggatgccc
gtccgcacttctccggagaggaagaagagccagcccaaactatctactttcatgcctgtt
gatgaacgaggaagccaggaaaagctggccaatggcgaagccgccatcatgggcgaccgc
aacagaaacctcctgaacaaaaagttgacctcatcctatgagaccttcagtgcagctagt
ttcagcaaaaatgaggaagccaacactgaggatattccccttacaaaaacgggggaatac
aagccatctcctgtcaatactctcactagaagagaagtttacctgtag
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