Globicephala melas (long-finned pilot whale): 115840840
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Entry
115840840 CDS
T11080
Symbol
POLB
Name
(RefSeq) DNA polymerase beta isoform X1
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03410
Base excision repair
gmf05166
Human T-cell leukemia virus 1 infection
gmf05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115840840 (POLB)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
115840840 (POLB)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
115840840 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115840840 (POLB)
Enzymes [BR:
gmf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
115840840 (POLB)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
115840840 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
115840840 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_5
HHH
Cdd1
HHH_2
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
115840840
NCBI-ProteinID:
XP_030690129
LinkDB
All DBs
Position
21:32801918..32821944
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AA seq
335 aa
AA seq
DB search
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVEKVDSEYIATVCGS
FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacggaaggcgccgcaggagacgctcaacgggggcatcaccgacatgctcaca
gaactcgcaaactttgagaagaacgtgaaccaggctatccacaagtacaatgcctacaga
aaagcagcatctgtgatagcaaagtacccacacaaaataaagagtggagcagaagctaag
aaactgcctggagtaggaacaaaaattgctgaaaagattgatgaatttttagctactgga
aaattgcgtaaactggaaaagattcggcaggatgatacgagttcatccatcaacttcctg
actcgagttagtggcattggtccttctgctgcaaggaagtttgtagatgaaggaattaag
acattagaagatctcagaaaaaatgaagataaattgaaccatcatcagcgaattgggcta
aaatattttgaggactttgagaaaagaattcctcgtgaagagatgttacaaatgcaagat
attgtactaagtgaagttgaaaaagtggattctgaatacattgctacagtctgtggcagt
ttcagaagaggggcagagtccagtggcgacatggatgttcttcttacccatccaagcttt
acctctgagtcaacaaaacagccaaagctgttacatcgtgttgtggagcagttacaaaag
gtccattttattacagacactctgtcaaaaggggaaacaaagttcatgggtgtttgccag
cttcccagtaaaaatgatgaaaaggaatatccacacaggagaattgatatcaggttgata
cccaaggatcagtattactgtggtgtcctctatttcactgggagtgatattttcaataag
aatatgagagctcatgccctagaaaaaggcttcacaatcaacgaatacacaatccgtccc
ttgggcgtcactggagttgctggagagccgctgcccgtggatagtgagaaggacatcttt
gactacatccagtggaaataccgagaacccaaggatcgaagtgaatga
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