Globicephala melas (long-finned pilot whale): 115841562
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Entry
115841562 CDS
T11080
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
115841562 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmf04147
]
115841562 (COL18A1)
00535 Proteoglycans [BR:
gmf00535
]
115841562 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
gmf00536
]
115841562 (COL18A1)
Exosome [BR:
gmf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115841562 (COL18A1)
Proteoglycans [BR:
gmf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115841562 (COL18A1)
Glycosaminoglycan binding proteins [BR:
gmf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115841562 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115841562
NCBI-ProteinID:
XP_030691483
LinkDB
All DBs
Position
4:complement(1005005..1102561)
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AA seq
1327 aa
AA seq
DB search
MAPRWPWLRPRRRRLLDLLAPVVLLLGVSAASAEPESQVMEVGLQPLLGEPLPRQVALVH
DPDMGPAYEFGADVGGDGWAARSLLPSTFFQHFSLLVHVRPASARAGVLFAVTDAAQAVV
LVGLKLAAARGAWQQVQLLYTEPGAARTHTAASFTLPTLDGRWTRLAIAVDGAHAALFVD
CKEVQRQPLARSPRGLQLEPDARLFVAQAGRADPDKFQGLISDLRLREDPQVSPLHCLDE
DEKDDDDRASGDLGSGLAETWERIGEELGAPLGPGLPEAPPVTSPPLAGVGSQEDFRTEE
IEEEATVSSLGAQTLPSLSTVATWDGGEWSPGGGLKEQGLKGQKGEPGAQGPPGPVGPQG
PAGPAVQSPDAQPVPGPQGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDM
GPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRPDRLTFIDMEGSGFGGDLESLRGPRGFPG
PPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGLPGTPGPPGPPGKDGQPGQ
TGQKGSLGEAGAPGPKGSKGDPGPIGTPGEHGLAGRPGPAGPPGPPGPPGPPGPGLAAGF
DDMEGSGGPFWSTARGANGPQGPPGPPGVQGDPGVAGPPGTKGEAGADGAPGFPGLPGRE
GAAGLQGPKGEKGPQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRALASVPGPEGR
VGLAGLPGPAGPKGDLGSRGQQGLPGPKGEKGEPGMVFSPDGRALTSAQKGAKGEPGFRG
PPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFSARGPPGPPGPPGPPGPP
GTPVYDSNAFVESGRPGPPGLPGHQGPSGPKGDKGEVGPPGPPGQFPLDLLHLGAEMKGE
KGDQGAAGQKGERGEPGGGGFFGSSVPGPPGPPGYPGIPGPKGESIQGQPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGQVRVW
ATYQTLLDQVHDVPEGWLIYVADREELYVRVRNGFRKVLLEARTPLPRGTDNEVAALQPP
VVQLHEGNPYPRREPPHPTARSWRADDILASAPRLTHAQPYPGAPHPGAYAHHRPATPTA
SPAHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDL
YSIVRRADRATLPIVNLRDEVLSPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQK
SLWHGSDPSGRRLTESYCETWRTEARAATGQASSLLAGRLLEQRAASCHSAFIVLCIENS
FTASSSK
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggtggccctggctgcgaccgcggcggcggcgcctcctggacttgctcgcc
cccgtggtcctgctgcttggggtcagcgcggcgtccgcagagccagagagccaggtcatg
gaggtggggctccagccgctgctcggggagcccctgccgcggcaggtggccctggtgcac
gaccccgacatggggcccgcctacgagttcggcgcagacgtgggtggtgacggctgggcg
gcccggagcctcctgcccagcacgttcttccagcacttctccctgctggtgcacgtgcgg
ccggcctcagcgcgcgcgggcgtgctcttcgcggtcacggacgcggcgcaggcggtggtc
ctggtgggcctgaagctggcggcggcgcgcggggcgtggcagcaggtgcagctgctctac
accgagcccggtgccgcccgcactcacacggccgccagcttcacgctgcccacgctggac
ggtcgctggacgcgcctggccatcgccgtggacggcgcacatgccgcgctcttcgtggac
tgcaaggaggtccagcgccagcccctggcgcgctccccacgcggcctgcagctggagccc
gacgcccgcctcttcgtggcccaggccggccgagcagaccctgacaagttccagggcctg
atctcggacctgaggctgcgtgaggacccccaggtgagccccctgcactgcctggatgag
gatgagaaggacgatgacgatagggcgtcaggagacttgggcagcgggcttgcggagacc
tgggagcgtatcggggaggagttgggcgcacccctgggacccgggctgcccgaggcccct
ccagtcacttctccacccttggctggagtgggcagccaggaagatttcagaactgaggaa
attgaggaggaggccacggtgtcttcgttaggagctcagaccctccccagcttgagcaca
gtcgccacgtgggacgggggcgagtggagccctgggggcggcctgaaagagcaaggcctg
aaggggcagaaaggagaaccaggcgctcagggtccccccggcccggtcggtccccagggt
cccgcaggcccggctgtgcagagccccgacgcacagcccgttcccgggccgcagggaccc
ccggggcccccgggtaaggatggcgcccccggaagggatggcgagcccggtgatcctggc
gaagatgggaaacctggggacaccgggccgcagggcttcccaggaaccccgggagacatg
ggccccaagggcgagaagggggatcctggggtcgggccgaggggacccccaggaccccaa
gggcctccggggccacccggaccctctttcagacctgacaggctgaccttcatcgacatg
gaggggtccgggtttggtggtgacctggagagcctccgcggccctcgaggcttccccggc
ccacctgggccccctggcgtcccaggcctgcccggagagccaggccgcttcgggatgaac
agctcggacgtccccggacccgcaggccttcccggagtgcctgggcgggatgggcccccc
gggcttcctgggaccccaggacccccaggtcctccaggaaaagatgggcaaccaggacag
accggccagaaaggcagccttggcgaggcgggcgccccaggacccaagggaagcaaggga
gaccccggccccatcggcacgcctggggagcacggcctggcaggacgccccggaccagca
ggaccaccagggcccccgggcccccccgggcctccaggcccaggactcgctgcagggttt
gacgacatggaaggctccgggggccccttctggtcgacagcccgaggtgccaatgggccg
cagggaccacctggcccgcctggagtccagggggatcctggagtcgcggggccaccaggg
accaagggagaggccggagcagacggagctcctgggttccccggccttcctggcagggag
ggtgcagccgggctccagggaccaaaaggagaaaaagggccccagggagagaaaggcgac
ccagggaaggacggagtggggcagccaggcctcccgggaccccccggacccccagggcct
gtcgtctacgtgtcggagcaggacagagcgctggcgagcgtgccgggccccgagggccgg
gtggggctcgcaggcctccccggaccagccgggccaaagggagacctgggctccagaggc
cagcagggcctcccgggacccaagggcgagaagggtgagccgggcatggtcttcagccct
gacggcagagcgctgacctccgcccagaaaggagccaagggtgagcctggcttccgagga
cccccgggtccctacgggcggcccgggcacaagggagagattggcttccctggacggccg
gggcgccccgggatgaatggactgaaaggggagaagggggagccgggagacgccagcgtg
ggattcagcgcgaggggtccgcccggcccacctgggcccccagggcccccaggccctccc
gggactcctgtctatgacagcaacgcgtttgtggagtctggccgccctggacccccggga
ctgccagggcaccaggggccttctggaccgaagggtgacaaaggagaagtgggcccaccc
gggccaccagggcagttcccgttggacctccttcacttgggcgctgagatgaagggggag
aagggtgaccaaggggccgccgggcagaaaggagaaaggggcgagcccgggggcggcggg
ttcttcggctccagcgtgcctggcccccccggcccgccaggctacccggggattccgggg
cccaagggagagagcatccagggccagcctggccctcctggacctcagggaccccctggc
atcggctacgagggacgccaggggcctcccgggccccctggacctccagggcccccggga
cccccatcctttcctggcccttacaggcagactatcagtgttcctggccccccaggccca
cctgggcccccaggaccgcccggatccatgggcacctcctcagggcaggtgagggtctgg
gccacgtaccagacgctgctggaccaggtgcacgacgtgccggagggctggctcatctac
gtggccgacagagaggagctgtacgtccgggtccgaaacgggttccggaaggttctgctg
gaggcccgcacgccccttccccgcgggacggacaacgaggtggccgctttgcagcccccc
gtggtgcagctgcacgagggcaacccgtacccccgccgggagcccccgcaccccacagcg
cggtcctggcgggccgacgacatcctggccagcgccccgcgcttgacacacgcccagccc
taccctggggccccgcaccccggcgcctatgcgcaccaccggccggcaacccccacggcc
tcacccgcccacactcaccacgacttccagccggtgctgcacctggtcgcgctcaacagc
ccgcagtcgggaggcctgcgcggcatccgcggcgccgacttccagtgcttccagcaggcg
cgcgccgcggggctggcgggcaccttccgcgccttcctgtcctcgcggctgcaggacctc
tacagcatcgtgcgtcgcgcagaccgcgccaccctgcccatcgtcaacctcagagatgag
gttctgtctcccagctgggaggccttgttctcgggctccgagggccagctgaagcccggt
gcccgcatcttctctttcgacggcagggacgtcctacagcaccccgcctggccccagaag
agcttgtggcacggctcagaccccagcgggcgccgcctgacggagagctactgcgagacg
tggcggactgaggccagggcggccacgggccaggcctcctcgctgctggcgggccggctg
ctggagcagagagcagcgagctgccacagcgccttcatcgtcctctgcatcgagaacagc
ttcacggcctcctcctccaagtag
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