Globicephala melas (long-finned pilot whale): 115842236
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Entry
115842236 CDS
T11080
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03013
Nucleocytoplasmic transport
gmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115842236 (UPF2)
03015 mRNA surveillance pathway
115842236 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115842236 (UPF2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115842236 (UPF2)
mRNA cycle factors
P-body specific factors
115842236 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
115842236
NCBI-ProteinID:
XP_060149292
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Position
2:19934994..20148268
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AA seq
1271 aa
AA seq
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MPAERKKPASMEEKESLLNSKEKDCSERRPVSSREKPKEEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEERKKQEEQAKRQQEEEAAQLK
EKEESLQLHQEAWERHQLRKELRSRNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTIT
EQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQ
VWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSVIYEQLKNIINADRESH
THVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTS
LTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDE
NMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAIL
FKDNEKSCQSKESNKDDYKEAKEPKDNKEVSSPDDLELELENLEINDDTLELEGGDEGED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEQEFLIKLGLVNDKDSKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS
NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGRSIF
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacagc
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagaggag
atcaagcttaccgccaagaaggaggttattaaggtccctgaagataagaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaagag
agaaagaagcaagaagagcaggcaaaacgtcagcaggaagaagaggctgcccagttgaaa
gagaaagaggaatcccttcagcttcatcaggaggcttgggaacgacatcagttaaggaag
gaacttcgcagcagaaaccaaaatgctccagacaaccgaccagaggaaaatttctttagc
cgactagactcaagtttgaagaaaaataccgcttttgtcaagaaactaaaaactattacg
gaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaagtacatt
gcagaggctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaattgtgct
gtgcacttatgctctctctttcaccagcgttacgccgactttgccccatcacttcttcag
gtttggaaaaaacattttgaagcaaggaaagaagagaaaacacctaacattaccaagtta
agaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaaggaa
ggtctttccgtaatctatgaacagctaaaaaatattattaatgctgatcgggaatcccat
acccatgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctggactt
gtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcctagtgag
ataattagtccagagaaacagcaacctttccagaatcttttaaaagaatactttacgtct
ttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaacagg
cgtattctacattctaaaggggagctgagcgaagatagacataaacagtatgaggaattt
gctatgtcttatcagaagctgctggcaaattctcaatccttagcagaccttttggatgaa
aatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaattgat
atatttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaggatgaa
gatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatcttg
tttaaagataatgaaaaaagttgtcagagtaaagagtccaacaaggatgattacaaagag
gcaaaggaacctaaggataataaggaggtatcaagtcctgacgatttggagcttgagttg
gagaacctagagattaatgatgacactttggagctagagggtggagatgaaggtgaagat
cttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactggatct
catctcaagctcatagtagatgcttttctccagcaattgcccaactgtgtcaaccgtgat
ctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaataggaag
aagctggtccgggcgctctttatagttcccagacaaaggttggatttgctaccattttat
gcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaaaca
aagaacaaaactgttcgttttattggagaactcactaagtttaagatgttcacaaaaaat
gatacactgcattgtttgaagatgcttctatcagacttttcccatcaccatattgaaatg
gcatgtaccctactagaaacatgtggaagatttcttttcagatctccagaatctcacctg
aggaccagtgtacttttggaacaaatgatgagaaagaaacaagcgatgcatctcgatgca
agatatgtcacaatggtggagaatgcatattactactgcaacccacctccagctgaaaaa
acagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaaggat
ctctccaaggttaccactgagaaggttttgagacagatgcgaaagttgccttggcaggac
caagaagtgaaagactatgtgatttgttgtatgataaacatctggaatgtgaaatataac
agcattcattgtgtagccaacctcttagcaggactagtgctctaccaggaggatgttgga
atccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaacct
aaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattaccga
atggtggaatccgctgttatttttagaactctttattcttttacttcatttggtgttaac
cctgatggctctccaagttcactggaccctcccgagcaccttttcaggattagactagtg
tgcactattttggatacctgtggccagtactttgacagaggttctagtaaacgaaaactc
gattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgacatagattacatgatcagtgacacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacacgac
ttggaacaagaattcttaataaaactaggcctagtaaatgacaaagactcaaaagattct
atgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaaaca
gaggaacaatctggaaatgaaagtgaagtgaatgagccagaggaagaggagggttctgat
aatgatgacgatgaaggggaggaagaagaggaagagaatacagattacctcacggattca
aataaggagaatgaaactgatgaagaaaatactgaggtaatgattaaaggaggtggactc
aaacatgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatgatgcta
gaaaatcttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgccatt
cccttgcatctcaaaagccagctgaggaaagggcccccactcggtggtggggagggagag
acagagtctgcagatacgatgccatttgtcatgttaaccagaaaaggcaataaacagcag
tttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcattggaaccagcaa
caggcagaacaggaagagaggatgagaatgaaaaagctcacactagatatcaatgaacgg
caagaacaagaagattatcaagaaatgctgcagtctcttgcccagcggccggctccagca
aacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcgcctaatgcagat
ctaatctttaagactggtgggaggtcgatattctga
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