Globicephala melas (long-finned pilot whale): 115842708
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Entry
115842708 CDS
T11080
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03013
Nucleocytoplasmic transport
gmf03015
mRNA surveillance pathway
gmf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115842708 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
115842708 (EIF4A3)
03015 mRNA surveillance pathway
115842708 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115842708 (EIF4A3)
03041 Spliceosome [BR:
gmf03041
]
115842708 (EIF4A3)
03009 Ribosome biogenesis [BR:
gmf03009
]
115842708 (EIF4A3)
03012 Translation factors [BR:
gmf03012
]
115842708 (EIF4A3)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115842708 (EIF4A3)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115842708 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
115842708 (EIF4A3)
Spliceosome [BR:
gmf03041
]
Complex C
Other components
EJC/TREX
115842708 (EIF4A3)
Ribosome biogenesis [BR:
gmf03009
]
Eukaryotic type
90S particles
Helicases
115842708 (EIF4A3)
Translation factors [BR:
gmf03012
]
Eukaryotic type
Initiation factors
eIF-4
115842708 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
115842708
NCBI-ProteinID:
XP_030693777
LinkDB
All DBs
Position
20:complement(31584114..31597079)
Genome browser
AA seq
411 aa
AA seq
DB search
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcggctacagctacaatggcgacgtcgggctcggcgcggaagcggctgctcaaagag
gaagacatgaccaaagtggaattcgagaccagtgaggaggtggacgtgacccccacgttc
gacaccatgggcctgcgggaggacctgctgcgcggtatctacgcctacggttttgaaaaa
ccatcagcaatccagcagcgagctattaagcagataattaaagggagagatgtcattgca
caatctcagtctggtacaggcaaaacagccaccttcagtatttctgtcctccagtgtttg
gatattcaggttcgtgaaacccaagctttgatcttggctccaacgagagagttagctgta
cagatccagaagggcctgcttgctttgggtgactacatgaacgtccagtgccatgcctgc
attgggggcaccaacgtgggggaggacatcaggaaactggattatggacagcatgttgtc
gctggcacacctgggcgtgtctttgatatgattcgtcgcagaagtttgaggacacgtgct
atcaagatgttggttttggatgaggctgatgaaatgttgaataaaggtttcaaagaacag
atctacgatgtgtacaggtacttgcccccggccactcaggtggtgcttatcagtgccaca
ctgccccatgagatcctggagatgaccaacaagttcatgactgaccctatccgcattttg
gtgaaacgtgatgaactgactctggaaggcatcaagcagttttttgtggctgtggagaga
gaagagtggaagttcgacacgctgtgtgacctctatgacacgctgaccatcactcaggct
gttatcttctgtaacaccaagaggaaggttgactggctgacagagaagatgagggaagcc
aacttcaccgtgtcatccatgcacggggacatgccccagaaggagcgtgagtccatcatg
aaggagttccggtcgggtgccagccgagtgctcatttctacagacgtctgggcccggggg
ctggacgtgccccaggtgtccctcatcattaattacgacctgcccaacaacagagagctg
tacatacacagaattgggcgatcaggtcgatatggccgaaagggcgtggccattaatttt
gtgaagaatgatgatatccgaatcctcagagacattgagcagtactactccactcagatt
gacgagatgcccatgaacgttgctgatctgatttga
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