KEGG   Globicephala melas (long-finned pilot whale): 115842941
Entry
115842941         CDS       T11080                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X2
  KO
K08524  retinoid X receptor alpha
Organism
gmf  Globicephala melas (long-finned pilot whale)
Pathway
gmf03320  PPAR signaling pathway
gmf04148  Efferocytosis
gmf04151  PI3K-Akt signaling pathway
gmf04659  Th17 cell differentiation
gmf04919  Thyroid hormone signaling pathway
gmf04920  Adipocytokine signaling pathway
gmf04928  Parathyroid hormone synthesis, secretion and action
gmf04932  Non-alcoholic fatty liver disease
gmf04976  Bile secretion
gmf05160  Hepatitis C
gmf05200  Pathways in cancer
gmf05202  Transcriptional misregulation in cancer
gmf05207  Chemical carcinogenesis - receptor activation
gmf05216  Thyroid cancer
gmf05222  Small cell lung cancer
gmf05223  Non-small cell lung cancer
gmf05226  Gastric cancer
gmf05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:gmf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    115842941 (RXRA)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    115842941 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    115842941 (RXRA)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    115842941 (RXRA)
   03320 PPAR signaling pathway
    115842941 (RXRA)
   04919 Thyroid hormone signaling pathway
    115842941 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    115842941 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    115842941 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    115842941 (RXRA)
   05202 Transcriptional misregulation in cancer
    115842941 (RXRA)
   05207 Chemical carcinogenesis - receptor activation
    115842941 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    115842941 (RXRA)
   05216 Thyroid cancer
    115842941 (RXRA)
   05222 Small cell lung cancer
    115842941 (RXRA)
   05223 Non-small cell lung cancer
    115842941 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    115842941 (RXRA)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    115842941 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    115842941 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gmf03000]
    115842941 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:gmf03310]
    115842941 (RXRA)
Transcription factors [BR:gmf03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    115842941 (RXRA)
Nuclear receptors [BR:gmf03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   115842941 (RXRA)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 115842941
NCBI-ProteinID: XP_060155892
LinkDB
Position
6:3155730..3251791
AA seq 365 aa
MNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKG
FFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRAE
NEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTNICQAADKQLF
TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSA
HSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVY
ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA
PHQMT
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgaaccccgtgagcagcagcgaggacatcaagcccccgctgggcctcaacggcgtcctc
aaagtcccggcccacccctcggggaacatggcgtccttcaccaagcacatctgtgctatc
tgcggggaccgctcctcaggcaagcactatggggtgtacagctgcgagggctgcaagggc
ttcttcaagcggacggtgcgcaaggacctgacttacacctgccgggacaacaaagactgc
ctgattgacaagcggcagcggaaccggtgccagtactgccgctaccagaagtgcctggcc
atgggcatgaaacgcgaagctgtgcaggaggagcggcagcggggcaaggaccgggctgag
aacgaggtggagtctacaagcagcgccaacgaggacatgcccgtggagaagatcctggag
gccgagctggccgtcgagcccaagaccgagacgtacgtggaggcaaacgtggggctgaac
cccagctcgcccaatgaccccgtcaccaacatctgccaggcggccgacaagcagctcttc
accctggtggagtgggccaagcggatcccacacttctccgagctgcccctggacgaccag
gtcatcctgctgcgggcaggctggaacgagctgctcatcgcctccttctcccaccgctcc
atagccgtgaaggacggcatcctcctggccaccgggctgcacgtccaccgcaatagcgcc
cacagcgcgggggtgggcgccatctttgacagggtgctgacggagctggtgtccaagatg
cgggacatgcagatggacaagacggagctgggctgcctgcgcgccatcgtcctcttcaac
cctgactccaaggggctctcgaacccggccgaggtggagacgcttcgcgagaaggtctac
gcgtccctggaggcgtactgcaaacacaagtaccccgagcagccaggaaggtttgcaaag
ctgctacttcgtctgccggccctgcgctccatcggcctcaagtgcctggaacacctcttc
ttcttcaaactcatcggggacacgcccatcgacaccttcctcatggagatgctggaagcc
ccgcaccaaatgacttag

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