Globicephala melas (long-finned pilot whale): 115843612
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Entry
115843612 CDS
T11080
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03013
Nucleocytoplasmic transport
gmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115843612 (CASC3)
03015 mRNA surveillance pathway
115843612 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115843612 (CASC3)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115843612 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
115843612
NCBI-ProteinID:
XP_030695651
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All DBs
Position
20:complement(41496674..41517443)
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AA seq
703 aa
AA seq
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MADRRRQRASQDTEDEESGASGSDSGGSPARGGGNCSGSAGGGGSGSLLSQRGGRAGALH
LRRLESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGDEGEYSEEENSKVELKSEAN
DAANSSAKDEKGEEKPDTKGTVTGERQSGDGQESTEPVENKVGKNGPKHLDDDEDRKNPA
YIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALY
GYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGERPNKSHRHQGPGGTLPPRTFINRN
AVGTGRMSAARNYSRSGGFKEGCAGFRPMEAGGQHAGRSGETVKHETSYRSRRLEQTPVR
DPSPEADAQVLGSPEKEEAAPEIPNPAPDTAPPAPDRPIEKKSYSRARRTRVKAGDAVKV
AEEVPPPPEGLTPAPPVPETTPPPPAKTGNWEAPVDSTTGGLEQDVAQLNITEQNWSPGQ
PSFLQSRELRSMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHI
SIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLY
PPPVSMAPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQV
YGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcgcaggacaccgaagacgaagaatctggtgct
tccggctcagacagcggcggttccccggcgcggggcggcgggaactgtagtggtagcgct
ggaggcggcggcagtggctctctgctttcccagcgcggaggccgagccggggcccttcat
ctgcggcggttggagagcgggggcgccaagagcgctgaggagtcggagtgtgagagtgaa
gatggcatcgagggcgatgctgttctctcggattatgaaagtgcagaagactcagaaggt
gatgaaggggagtacagtgaagaggaaaactccaaagtggagctgaaatcagaagccaat
gatgctgctaattcttcagcaaaagacgagaagggggaagaaaagcctgataccaaaggc
actgtgactggagagaggcaaagtggggatggacaggagagcacagagcctgtggagaac
aaagttggtaaaaatggccctaagcatttggatgatgatgaagatcggaagaacccagca
tacataccccggaaagggctcttttttgagcatgatcttcgagggcagactcaggaggag
gaagtcagacccaagggacgtcaacgaaagctgtggaaggatgagggtcgctgggagcat
gacaagtttcgggaagatgaacaggctccaaagtcccgacaggagctcattgctctttat
ggctatgatatccgctcagctcacaatcctgatgacatcaaaccccgaagaattcggaaa
cccaggtttgggagtcctccacaaagagatccaaactggattggggagcggccaaataag
tcccatcgccaccagggtcctgggggcaccttaccaccaaggacatttatcaacaggaat
gctgtaggtactggccgcatgtctgctgccaggaattactctcgatctggaggcttcaag
gaaggttgtgctggttttaggcctatggaagctggcgggcagcatgctggcaggtctggt
gagactgttaaacatgagactagttaccggtcacggcgcctggagcagactccagtaagg
gatccatctccagaagcagatgctcaagtgcttggtagtcctgagaaggaagaggcagcc
ccagagataccaaatcctgctcctgacactgcaccaccagctcctgacaggcctattgag
aagaaatcctattcccgggcaagaagaaccagggtcaaagctggagatgcagtcaaggtt
gcagaggaggtgccccctccacctgaagggctgaccccagcacctccagtcccagaaact
acgcctcctccacctgctaagactgggaactgggaggctccagtggattctactacaggt
ggacttgaacaagatgtggcacaactaaatataacagaacagaattggagcccagggcag
ccttcatttctgcaatcacgtgagcttcggagtatgcccaaccacatacacatgggagca
ggacctccacctcagtttaaccggatggaagaaatgggtgtccagggtgggcgagccaaa
cgctattcatctcaacggcaaagacctgtgccggagccccctgcccctcctgtgcacatc
agtatcatggagggacattactatgatccattgcagttccagggaccaatctatacccat
ggtgacagccctgccccactgcctcctcagggcatgattgtgcagccagaaatgcacctt
ccccacccaggtttacatccccaccagacaccggcacctctgcccaatccaggcctctat
cccccaccagtgtccatggctccaggacagccaccacctcagcagttgcttgctcctacc
tacttttctgctccaggcgtcatgaactttggtaatcccagttacccttatgctccaggg
gcactgcctccccccccaccgcctcatctatatcctaacacacaggccccatcacaggta
tatggaggagtgacctactataaccccgcccagcagcaggtgcagccaaagccctcccca
ccccggaggactccccagccagtcaccatcaagcccccaccacctgaggttgtaagcagg
ggttccagttaa
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