Globicephala melas (long-finned pilot whale): 115843955
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Entry
115843955 CDS
T11080
Symbol
PCDH19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmf04515
]
115843955 (PCDH19)
Cell adhesion molecules [BR:
gmf04515
]
Cadherins
Protocadherins
115843955 (PCDH19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Neur
Motif
Other DBs
NCBI-GeneID:
115843955
NCBI-ProteinID:
XP_030696405
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Position
X:43080663..43193959
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AA seq
1098 aa
AA seq
DB search
MESLLLPVLLLLAVLWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASA
FRVVSNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIK
DLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKT
RGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPHLGTVGLSIKVTDSNDNNPVFGE
STYLVTVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTV
TGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSE
SAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDGGVPMLQSSKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDP
DLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGL
PSLQSNSTVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGEN
GRVTYDMTEGDRGFFEIDQVNGEVRTTRTFSESSKASYELIVVAHDHGKTSLSASALVLI
YLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEY
SYGHQKKSSKKKKINKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRR
SESTFLNVENQNTRNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRA
HLIKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNNVLNTSVTSMGSQMP
DHDQNEGFHCREECRILGHSDRCWMPRNPMPTRSKSPEHVRNIIALSIEATAADVEAYDD
CGPTKRTFATFGKDVSDHPAEEKPTLKGRRTVDVTICSPKVNGAIREAGNGCEAISPVTS
PLHLKSPLPTKPSVSYTVALAPPARDLEQYVNNGPSRPSEAEPRGADGEKVVHEVSPILK
EGRDKESPGVKRLKDIIL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgctcctgctgccggtgctgctgctgttggctgtactgtggacacaggcggcc
gccctcattaacctcaagtactcggtagaagaggagcagcgcgccgggacggtgatcgcc
aacgtggccaaggacgcgcgcgaggcgggctttgcactggacccacggcaggcctctgcc
tttcgtgtggtgtccaactccgctccgcacctggtggacatcaaccccagctcgggcctg
ttggtcaccaagcagaagatcgaccgtgacttgttgtgccgccagagccccaagtgcatc
atctcgcttgaggtcatgtccagctcaatggagatctgcgtgattaaggtggagatcaag
gacctgaatgacaacgcgcccagcttcccggcggcacagattgagctggagatctcagag
gcggccagccctgggacgcgcatcccgctggacagcgcctatgacccggactcgggcagc
ttcggcgtgcagacgtacgagctcacgcctaacgagctatttggcctggagatcaagacg
cgcggcgacggctcgcgctttgcagaactcgtggtggagaagagtctggaccgggagacg
cagtcgcactacagctttcgcatcactgcgctcgacggcggcgacccgccgcacctgggc
actgttggcctcagcatcaaggtgaccgactccaatgacaacaaccctgtgtttggcgag
tccacctatttagtgaccgtgccagagaactcacctcccaacacgcctgtcatccgtctc
aacgccagtgacccagacgaaggcaccaatggccaggtggtctactccttctatggctac
gtcaacgaccgcactcgagaactcttccagatcgacccgcacagcggcctggtcacggtc
actggtgccctagactatgaagagggccatgtgtacgaactggatgtgcaggccaaggac
ctggggcccaactccatcccggcacactgcaaggtcaccgtcagcgttctggacaccaat
gacaacccgccggtcatcaacctgctgtcggtcaacagcgagctggtggaggtgagcgag
agcgccccaccgggctacgtgattgcactggtgcgggtgtctgatcgagactccggcctc
aatgggcgcgtgcagtgccgtttgctgggcaacgtgccctttcgtctgcaggagtatgaa
agcttctccactatcctggtggacggacgactggaccgcgagcagcacgaccagtacaat
ctcacgatccaggcgcgcgacggcggcgtgcccatgctgcagagctccaagtcctttacc
gtgcgcatcaccgacgagaacgacaaccacccgcacttctccaagccctactaccaggtc
attgtgcaggagaacaacactcccggtgcctatctgctctctgtgtcggcccgagacccc
gacctgggtctcaatggcagtgtttcctaccagatcgtgccgtcgcaggtgcgggacatg
cctgtcttcacctatgtctccatcaaccccaactcgggtgacatctatgcgctgcgatcc
ttcaaccacgagcagaccaaggcatttgaattcaaggtgctggccaaggacggcggcctg
ccctcgctgcagagcaactccactgttcgggtcatcatcctcgacgtcaatgacaatacc
ccagtcatcaccgccccacccctgatcaacggcaccgctgaagtctacataccccgcaac
tcgggcataggctacctggtgaccgttgtcaaagcagacgactacgatgagggcgagaat
ggccgggtcacctatgacatgacagagggcgaccgcggcttctttgaaatagaccaggtc
aatggcgaggtcagaaccactcgcaccttcagcgagagctccaaagcttcctacgagctt
attgtggtggcccacgaccacggcaagacgtctctctccgcctctgcgctcgtcctaatc
tacctatcccctgctctcgacgcccaagagtcgatgggttcggtgaacttgtccttgatt
ttcattatcgccctgggctccattgctggcatcctctttgtcactatgatctttgtggcg
atcaagtgcaagagagacaacaaagaaatccggacctacaactgcagaatcgctgagtac
tcctatgggcatcaaaagaaatcaagcaagaagaaaaaaatcaataagaatgacatccgc
ctggtaccccgggatgtggaggagacagacaagatgaacgttgtcagttgctcctccctg
acctcgtccctcaactatttcgactaccaccagcagacccttcctctgggctgccgccgc
tctgagagcactttcttgaatgtggagaaccagaatacccgcaataccagcgccaaccac
atctaccatcactctttcaacagccagggcccccagcaaccagacctgatcatcaacggt
gtgcctctgcccgagactgaaaactattcttttgactccaactacgtgaacagccgagcc
catttaatcaaaagcagctccaccttcaaggacttagagggcaacagcctgaaggatagc
ggccatgaggagagtgaccagaccgacagtgagcatgatgtccagcgaagcctgtattgt
gacacggctgtcaataatgtgctgaacaccagcgtgacctccatgggatctcagatgcct
gaccatgatcagaatgaaggatttcattgcagggaagaatgccggattcttggccactct
gacaggtgctggatgccccggaaccccatgcccacccgctccaagtcccctgagcatgtg
aggaacatcattgcactgtccattgaagctactgctgccgatgttgaagcttatgatgac
tgcggccccaccaagcggacttttgcaacctttggaaaggatgtcagcgaccacccagct
gaggagaagcccaccctgaaaggcaggaggactgttgatgtgaccatctgcagccccaaa
gtcaacggcgctatccgggaggcaggcaatggctgtgaggctattagccctgtcacctcc
cctctgcacctcaagagccctctgcctactaagccttctgtgtcttacaccgttgccctg
gcgcccccggcccgcgatctagagcagtatgtcaacaatggcccttctcgtccctctgaa
gctgaaccccgtggagctgatggcgagaaagtcgtgcatgaggtcagccctattctgaag
gaaggtcgagacaaagagtctcctggcgtgaagcgtctgaaggatatcattctctaa
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