Globicephala melas (long-finned pilot whale): 115844220
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Entry
115844220 CDS
T11080
Symbol
PCDH12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmf04515
]
115844220 (PCDH12)
Cell adhesion molecules [BR:
gmf04515
]
Cadherins
Protocadherins
115844220 (PCDH12)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
NNH1
Motif
Other DBs
NCBI-GeneID:
115844220
NCBI-ProteinID:
XP_030696970
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Position
3:complement(118209903..118222874)
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AA seq
1199 aa
AA seq
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MMRLLPLLLGLWGPGGYLFLSGDCQEVATLTVKYQVSEEVPSGTVIGKLSQELGREERSG
RAGAAFQVLQLPQALPIQVDSKDGLLSTGRRLDREQLCRQQDPCLVSFDVLATGDLALIH
VEIQVLDINDHQPQFPKGEQELEISESASLRTRIPLDRALDPDTGPNTLHSYTLSPSEHF
ALDVIVGPDETKHAELVVVKELDREIHSFFDLVLTAYDSGNPPKSGTSLVKVNVLDSNDN
SPVFAESSLALEIQEDAAPGTLLINLTATDPDQGPNGEVEYFLSKHVPPEVLDTFSIDAK
TGQVILRQPLDYEKNPAYEVDVQARDLGPNPIPAHCKILIKVLDVNDNTPNIHITWASQP
SLVSEALPKDSFIALIMANDLDSGNNGLVHCWLSQELGHFRLKRTNGNTYMLLTNATLDR
EQWPQYTLTLLAQDQGPQPLSVKKQLSIQISDANDNAPVFEKSRYQVSTRENNLPSLHLI
TIKAHDADLGVNGKISYHIQDSPVSHLVAIDSDTGEVTAQRSLDYEQMAGFEFLVIAEDR
GQPQLASSVSVWVSLLDANDNVPEVIHPVLSDGKASLSVLVNASTGHLLVPIETPNGVGP
AGTDMPPQATPSSRPFLLVTIVARDADSGANGELLYSIQSGNEAGLFVLSPHLGQLFINI
TNASSLTGSEWELEIVVEDRGSPSLQTRALLRVFFVTSVDHLRDSAREPGALSTSVLTVI
CLVVLLAISGLILALIMSICRTEKKDNRAYNCREAESTYRHQPKRPQKHIQKADIHLVPV
LRGQVDEPGEAGQPPKHVGKEAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGTLAESRE
VLQDTVNLLFNHPRQRNASRENLNLPEPQPATGQPRSRPLKVAGSPTGRVPGDQGSKEAP
LSPPASSATLRRQRNLHGKVAPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQ
QISQLLSLLHQGQFQPKPNHRGNKYLAKPGGSRSAIPDTDGPGARAGGQAEPDQEEGPLD
PEEDLSVKQLLEEELSNLLDPYTGLALDRLSVPDPAWMARLSLPLATNYRDNVFSPDAAT
SEEPRTFQTFGKAPGPELSPTGTRLASTFLSEMSSLLEMLLEQRPAVPVEAASEVLRRLS
VCGRTLSLDLATSGASGSEGPGVRSGKKGAEGRTSSGGSSRDLWIQEPGAPGDVRKPRP
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgacttctgccacttctgctgggactttgggggccaggtggctacttgttcctt
tcaggggattgtcaggaggtcgccactctcactgtgaaatatcaagtgtcagaggaagta
ccgtccggcacagtgatagggaagctgtctcaggaactgggccgggaggagaggtctggg
cgagcaggggctgccttccaggtcttgcagctgcctcaggcgctccccatccaggtggac
tccaaggacggcctgctcagcacggggaggcggctggaccgggagcagctttgccggcag
caggacccctgcctggtttcctttgacgtgcttgccacaggggatttggctctcatccac
gtggagatccaggtgctggacatcaacgaccaccagcctcagtttcccaaaggtgagcag
gagctggaaatctctgagagcgcctccctgcgcacccggatccccctggacagagctctg
gacccagacactggccccaacactctgcactcctacacgctgtctcccagcgagcatttt
gccctggatgtcattgtggggcccgatgagaccaaacacgcggaactcgtggtggtgaag
gagctggaccgggaaatccactcattttttgatctggtgttaactgcctatgacagtggg
aacccccccaagtcaggcaccagcttggtcaaggtcaatgtcctggactccaatgacaat
agccctgtgtttgctgagagttcgctggcactggaaatccaagaagacgctgcccctggt
actctcctcataaacttgactgccacagaccctgatcaaggccccaacggggaggtggaa
tacttcctcagtaagcacgtgcctccagaggtgctggacaccttcagtattgatgccaag
acaggccaggtgattctgcgtcaacccctagactatgagaagaatcctgcctatgaggtg
gatgtccaggcaagggacctgggtcccaatcccatcccagcccactgcaaaattctcatc
aaggtcctggatgtcaatgacaacaccccaaacatccacatcacgtgggcctcccaacca
tccctggtgtccgaagctcttcccaaggacagtttcattgctctcatcatggcaaatgac
ctagactcaggaaacaacggcctggtccactgttggctgagccaagagctgggccacttc
aggctgaagaggaccaatggcaacacatacatgctgctaactaatgccacgctggacaga
gagcagtggccgcaatacaccctcactcttttggcccaagaccaaggaccccagccctta
tcagtcaagaaacagctcagcattcagatcagtgatgccaacgacaacgcacctgtgttt
gagaaaagcaggtaccaggtctccactcgggaaaacaacctaccctctcttcacctcatt
accatcaaggcccatgatgcagatctgggcgttaatgggaaaatctcataccacatccag
gactccccagtttctcacttggtagctattgactcagacacaggcgaggtcaccgctcag
aggtcactggactatgaacagatggccggcttcgagttcctggtgatcgcagaggacagg
gggcagccccagcttgcatccagtgtctctgtgtgggtcagcctgctggatgccaatgat
aatgtcccagaggtgattcaccccgtgctcagcgatgggaaagccagtctctcggtgctt
gtaaatgcctccacaggtcacctgctggtgcccattgaaactcccaatggcgtgggtcca
gcaggcactgacatgccaccacaggccacccccagctcccggccattccttttggtgacc
attgtagcaagagatgcagactcgggggcaaatggagagctcctctacagcattcagagt
gggaacgaagccggtctctttgtcctcagcccccacctggggcagctgttcatcaacatc
accaatgccagcagcctcacggggagtgagtgggagctggagatcgtggtggaagaccgg
ggcagcccctccttacagacccgggccctgttgagggtcttcttcgtcaccagtgtggac
cacttgagggactcagcccgtgagcctggggctctgagcacatcggtgctcacggtgatt
tgcctggtcgtactgctggccatctccgggttgatcttggctctgattatgtccatttgc
cggacggagaagaaggacaacagggcctacaactgtcgggaggccgagtccacctaccgt
caccagcccaagaggccccagaaacacatccagaaggcggacatccacctcgtgcctgtg
ctcaggggccaggtggatgagcctggagaagctgggcagccccccaagcacgtgggcaag
gaagcgatgatggaagcaggctgggacccctgcctgcaggccccctttcatctcacaccg
accctgtacaggactctgcgtaaccaaggtaaccagggaacgctggccgagagccgagag
gtgctgcaggacactgtcaacctccttttcaaccatcccaggcagaggaatgcctcccgg
gagaacctgaaccttcccgagccccaacctgcgacgggccagccccgctcaaggcccctg
aaggttgcgggcagccccacagggagggtgcctggggaccagggcagtaaggaggccccg
ctgagcccgccggcctcctctgcaaccctgaggcggcagcggaatctccatggcaaagta
gcccctgagaaagagtcaggcccccgtcagatcctgcggagcctggtccggctgtctgtg
gctgcctttgcggagcggaaccccgtagaggagctcactgtggattcgcctcctgttcag
caaatctcccagctgctgtccttgctgcatcagggccaattccagcccaaaccaaaccac
cggggaaataagtacttggccaagcccggcggcagcaggagtgcaatcccagacacagat
ggcccaggtgccagggctggtggccaggcagaaccagatcaggaggaagggcccttggac
cctgaggaggacctctctgtgaagcagctgctagaagaagagctgtcgaacctgctggac
ccctacacaggcctggccctggaccggctgagcgtccccgatccggcctggatggcaaga
ctctctttgcccctcgccaccaactaccgtgacaacgtgttctccccggacgctgcgacc
tcggaggagcccaggaccttccagacgttcggcaaggcgccggggcccgagctgagcccg
acgggcacgcggctggctagcaccttcctgtcggagatgagctcactgttggagatgctg
ctggagcagcgccccgccgtgccggtggaggccgcctccgaggtgctgcggcggctctca
gtctgcggaaggaccctgagtctagacctagccaccagcggggcctcgggctcggaaggc
cctggggtccgatctggaaagaagggggccgagggcaggaccagcagcggcggcagcagc
agggacctgtggatccaggaaccaggggccccgggagatgttaggaagcccaggccttga
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