Globicephala melas (long-finned pilot whale): 115844248
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Entry
115844248 CDS
T11080
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X2
KO
K16498
protocadherin delta 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
115844248 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmf01009
]
115844248 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmf04515
]
115844248 (PCDH1)
Protein phosphatases and associated proteins [BR:
gmf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115844248 (PCDH1)
Cell adhesion molecules [BR:
gmf04515
]
Cadherins
Protocadherins
115844248 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
115844248
NCBI-ProteinID:
XP_030697043
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All DBs
Position
3:complement(118141171..118165080)
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AA seq
1215 aa
AA seq
DB search
MGSLRRSPGPGGQRLLPPALLLALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYG
FPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGEPCILEFEVSITD
LVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPENTNNGSLFSIPVASDRDAGPNGV
ASYELQVGPEAQGLFKLQVAEDQDGKQPQLIVMGNLDRERLDSYDLTIKVQDGGNPPRAS
SALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQV
PEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDVND
NAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQL
RQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDN
APVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAKGLFTISPETG
EIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVM
ENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAE
DIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKELERRHHGLHRLVVKVTDRGKPPR
SGTALVHLYVNDTLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVV
AVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSSKVSKGNKSKGKKSKSPKPA
KPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFS
ATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRG
GQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPA
ATPASAQTAKREIYL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggggtccctgaggcgcagcccaggccctggggggcaacggttgctgccgcctgccttg
ctgctggcccttctgctgctgctggctccgtccccaggccacgccactcgggtggtgtac
aaggtgccagaggagcaaccgcccaacaccctcattgggagcctcgcagccgattacggt
tttccagacgtgggccacctatacaaactagaagtaggcgccccgtacctgcgggtggac
ggcaagacaggcgacatctttaccacggagacctctatcgaccgcgaggggctccgagaa
tgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatcacggac
ctcgtgcagaatggcagcccccggctgctagagggccaaatagaggtccaggacatcaat
gacaacacgcccaacttcgcctcaccagtcatcacgctgcccattcccgagaacaccaac
aatggctcactcttctccatcccagtggcttcggaccgcgatgctggccccaacggtgtg
gcatcctatgagctgcaggtggggcccgaggcccaggggctctttaagctgcaggtggca
gaggaccaggacggaaagcagccgcagctcatcgtgatgggcaacctggaccgggagcgc
ttggactcttatgacctcactatcaaggtgcaggatggtggcaaccccccacgcgccagc
agcgccctgctgcgggtcactgtgctcgacaccaatgacaatgcccccaagttcgagcgg
ccgtcctacgaggctgagctgtctgagaacagccccataggacactcagtcatccaggtg
aaggccaatgactctgaccaaggtgccaacgcagagatcgactacacgttccaccaggtg
cccgaggttgtgaggcgtcttctgagactggacaggaacacgggacttatcactgtgcag
ggccccgtggaccgtgaggacctaagcaccctgcgcttctcggtgcttgccaaggaccga
ggcaccaaccccaagagtgcccgagcccaagtggtggtgaccgtgaaggacgtgaacgac
aatgcccccaccattgagatccggggcatagggctggtgactcaccaagacgggatggct
aacatctcagaggacgtggcagaagagacagctgtggccctggtgcaggtatctgaccga
gatgagggagaaaacgcagctgtcacctgtgtggtggcaggtgatgtgcccttccagctc
cgccaggccagtgagacgggaagtgacagcaagaagaagtacttcctgcagaccaccacc
ccgctcgactatgagaaggtcaaagactacaccatcgagattgtggccgtggactctggc
aaccccccactctcgagcaccaactccctcaaggtgcaggtggtggatgtcaatgacaat
gcacctgtcttcacccagagcgtcactgaggtcgccttcccagaaaacaacaagccaggt
gaagtggtcgccgaggtcactgccagtgatgccgactcgggctccaatgctgagctggtt
tactctctggagcctgagccggctgccaagggcctcttcaccatctcacctgagactgga
gagatccgggtgaagacatcccttgatagggaacagagggaaagctacgagttgaaggtg
gtggcagccgaccggggcagccccagcctccagggcacagccaccgtccttgtcaacgtg
ctggactgcaatgacaatgaccccaagttcatgctgagtggctacaacttctcagtgatg
gagaacatgccggcgctgagtccagtgggcatggtgacggtcattgatggggacaagggg
gagaacgcccgggtgcagctcacggtggagcaggacaatggtgattttgttatccagaac
ggcacgggcaccatcctctccagcctgagcttcgatcgggagcagcaaagcacctatacc
ttccagctgaaggcggtggacggcggcgtcccacctcgctcggcctacgttggcgtcacc
atcaacgtgctggatgagaatgacaacgcgccctttatcaccgccccttccaacacctcc
caccggctgctgaccccccagacccgtctgggcgagacggtcagccaggtgacagctgag
gacattgactctggtgtcaacgctgagctgacctatagcatcgccggcggcaacccttac
ggactcttccagattgggtcgcattccggcgccatcaccctggaaaaggagcttgagcgg
cgccaccacgggctgcaccgcttagtggtgaaggtcactgaccgcggcaagccccctcgc
tctggcacagccttggtccacctgtatgtcaatgacaccctggccaaccgcaccctgctg
gagaccctgctgggccacagcctggacacgccgctggacatcgacattgctggggatccg
gaatacgagcgctccaagcagcgcggcaacatcctgtttggcgtggtggcgggtgtcgtg
gccgtggccttgctcatcgccctggccgtgctcgtgcgctactgccggcaacgggaggcc
aagagtggctaccaggctggcaagaaggagaccaaggacctgtatgcccccaagcccagc
agcaaagtttccaagggaaacaaaagcaagggcaagaagagcaagtctcccaagcccgcg
aagccggtggaggacgaggatgaggccgggctgcagaaatccctcaagttcaacctgatg
agcgatgcccctggggacagcccccgcatccacctgcccctcaactacccaccaggcagc
cctgacctcggccgccactatcgctctaattccccactgccttccatccagctgcagccc
cagtcaccctccgcctccaagaagcaccaggtggtgcaggacctgccaccagccaacact
ttcgtaggcactggggacacgacgtccacgggctctgagcagtactccgactacagctac
cgcaccaacccccccaaataccccagcaagcagttacctcaccgccgagtcaccttctcc
gccaccagccaggcgcaggagctgcaggacccgtcccagcacagttactacgacagtggc
ctggaggagtccgagacgccgtccagcaagtcatcctcggggccccgactcggtccgctg
gctctgcctgaggatcactatgagcgcaccacccccgatggcagcataggagagatggag
caccccgagaacgacctgcgccctttgcctgacgtcgccatgacgggcacatgtacccgg
gagtgcagcgagtttggccactccgacacgtgctggatgcctggccagtcatctcccagc
cgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgagga
gggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacaccaaaacg
gcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgattcctgc
aaggactcggccaccttggaggaaatccccctgacccagacctcggacttcccacctgca
gccacaccggcatctgcccagacggccaagcgcgagatctacctgtga
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