Globicephala melas (long-finned pilot whale): 115845050
Help
Entry
115845050 CDS
T11080
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
gmf04142
Lysosome
gmf04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
115845050 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
115845050 (NPC1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
115845050 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gmf02000
]
115845050 (NPC1)
Transporters [BR:
gmf02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
115845050 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
115845050
NCBI-ProteinID:
XP_030698505
LinkDB
All DBs
Position
13:49539967..49587675
Genome browser
AA seq
1277 aa
AA seq
DB search
MSACGPALGLLLLLLCPAQVFSQSCVWYGECGIASGDKRYNCRYSGLPKPLPEDGYDLVQ
ELCPGFFFGNVSLCCDVQQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQF
LNVTAVEDYVDPVTNQTKTNVKELQYYVGESFANAMYNACRDVEAPSSNEKALGLLCGKE
AEACNATNWIEYMFNKDNGQAPFTITPIFSDLPAHEMEPMNNATKGCDESVDEVTGPCSC
QDCSIVCGPKPQPPAPPVPWRILGLDAMYVIMWSTYMAFLLVFFGAFFAVWCYRKRYFVS
EYTPIDGNIAFSVNASDKGGPSCCDSLGAAFEARLQRLFTRWGLFCVQHPGCIVFFSVAF
IAACSSGLVFVQVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRTEQLIIQAPLTQPHMY
HPYPSGADVPFGPPLAIDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSPYNKHCT
IMSVLNYFQNSHSVLDHKVGDYFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGP
VFPWLVLGGYDDENYNNATALVITFPVNNYCNDTEKLQKAQAWEREFINFVKSYKNPNLT
ISFKAERSIEDEINRESNSDIFTVLISYGIMFLYISIALGHIESCSRFLVDSKISLGIAG
ILIVLSSVACSLGIFSYIGIPFTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETL
DQQVGRVLGEVAPSIFLSSFSETVAFFLGGLSVMPAVHTFSLFAGMAVLIDFLLQITCFV
SLLGLDVKRQERNRLDVLCCVGGAADRAGIQASESCLFRFFRDAYAPFLLKDWMRPIVVA
VFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVTDYFQSLSRYLHAGPPVYFVMEGGHDYA
SLKGQNMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVY
NSTDRFCNASVVDPACVHCRPLTPEGKQRPQGADFMRFLPMFLSDNPNPKCGKGGHAAYS
AAVNILGNGTGVGATYFMTYHTVLKTSADFIDAMEKARLIASNITRTMGLEGGDHRVFPY
SVFYVFYEQYLTMIDDTLFNLGVSLGAIFVVTVVLLGCELWSAVIMCVTIAMILVNMFGV
MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRVERAEEALSRMGSSVFSG
ITLTKFGGITVLAFAKSQIFKRFYFRMYFAMVLLGATHGLIFLPVLLSYIGPPINKAKSL
AAQERHRGTERERLLNF
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgtgcggcccggccctcggcctcctcctgctgctgctctgcccggcgcaggta
ttttcacagtcctgtgtttggtatggagaatgtggaattgcatctggagataagaggtac
aattgcagatattctgggctaccaaagccgttgccagaggacggctatgacctggtgcag
gaactctgtccagggttcttcttcggcaacgtcagtctttgctgtgatgttcagcagctt
cggacactgaaagacaacctgcagctgcctctgcagtttctgtccagatgtccatcctgt
ttttataacctaatgaacctgttttgtgagctgacatgtagccctcgacaaagtcagttt
ctgaacgttacagcagtggaagattatgttgatcctgttacaaaccagacaaaaacaaac
gtaaaagaattacaatactatgttggagagagttttgccaatgccatgtacaatgcctgc
agggacgtggaggccccctcgagtaacgagaaagccctggggctgctgtgcgggaaggag
gccgaagcctgcaacgccaccaactggattgagtacatgttcaacaaggacaacggccag
gcgcctttcaccatcacgcccatcttttcagatcttccagcccatgagatggaacccatg
aacaatgccaccaagggctgtgacgagtccgtggatgaggtcacggggccctgcagctgc
caggactgctcgatcgtctgtgggcccaagccccagccccccgcccctcctgttccctgg
agaatcctgggtctggacgccatgtatgtcatcatgtggagcacctacatggcattcctg
ctcgtgttctttggtgcattctttgccgtgtggtgctacagaaaacggtattttgtctcc
gagtacacccccattgatggcaatattgctttctctgtaaatgccagtgacaaagggggg
ccgtcctgctgtgactctctgggtgccgccttcgaagcccgtctacagcggctcttcaca
cggtggggcttgttctgcgtccaacaccccggctgcatcgttttcttctccgtggccttc
atcgccgcctgttcttcgggcctggtgtttgtgcaggtcacgacagacccggtggacctc
tggtctgcgcccggcagccaggcgcgccgggagaaggagtacttcgacacacacttcgga
cctttcttccgcaccgagcagctcatcatccaagcccccctcacccagccgcacatgtac
catccctacccctctggagccgacgtgccctttgggcctccacttgccatagacatcttg
caccaggttcttgacttacaaacagccatcgagaacattactgcatcttacaacaatgag
actgtgacactccaggacatctgcttggcccccctctcaccgtataacaagcactgcacc
atcatgagcgtgttaaattacttccagaacagccattccgtgctggaccacaaagtagga
gactacttctttgtgtacgcggattaccacacacacttcctgtactgcgttcgggctccc
gcctccctgaatgacaccagtttgctccacgatccttgcctggggacctttggtggacca
gtgttcccgtggcttgtgttaggaggctacgatgatgaaaactacaataacgccacagcc
cttgtgattacctttcctgtcaataattactgtaacgatacagagaaactccagaaggcc
caggcctgggaaagagagtttattaattttgtgaaaagctacaagaatccaaatctgacc
atttcttttaaggctgaacgaagtattgaagatgaaataaaccgtgaaagtaacagcgat
atcttcactgttctaatcagctatggcatcatgtttttatatatttccatagccttgggg
catatcgaaagctgtagcagatttctggtggattcgaaaatctccctgggcatcgcaggc
atcctgatcgtgctgagctcggtggcgtgctccttgggcatcttcagctacattgggatc
cccttcaccctcattgtgatagaagtcatcccattcctggtgctggccgtgggagtggac
aacatcttcattctggtccagacctaccagagagatgaacgtcttcaaggggagacgctg
gaccagcaggtgggccgggtcctgggagaagtggccccaagtattttcctgtcgtccttt
tcagagacagtagcatttttcttaggaggcctgtccgtgatgccggctgtgcacaccttc
tctctctttgcggggatggcagtcctcattgacttcctccttcagattacctgttttgtg
agtctcttggggttagacgttaagcggcaagagaggaaccgactggacgtcctctgctgt
gtcgggggcgcggcagacagagcaggcatccaggcctcggagagctgcttattccgcttc
ttcagagacgcctatgctccatttctgcttaaggactggatgcggcccattgtggtagcg
gtatttgtgggtgttctgtcattcagtatcgcagtcctgaacaaagtagaaatcggcttg
gatcagtctctgtcaatgccagatgactcctacgtgacggattatttccagtccctcagt
cgctacctgcacgcgggcccgcccgtgtactttgtcatggagggagggcacgactacgct
tctctgaaagggcagaacatggtgtgcgggggcctgggctgcaataacgactcgctggtg
cagcagatcttcaccgccgcccagctggacaactatacccggataggctttgctccctcg
tcctggattgacgattattttgactgggtcaagccacagtcgtcttgctgtagagtctac
aacagcacggatcggttctgcaacgcatcggtggttgaccctgcctgcgtccactgccgg
cctctgactccagagggcaagcagaggcctcagggtgcagacttcatgaggttcctgccc
atgttcctctccgataacccgaaccccaagtgtggcaaagggggacacgccgcttacagc
gcggcagttaacatcctcggcaacggcacgggcgtcggagccacgtacttcatgacctac
cacacggtgctcaagacctccgctgacttcatcgacgccatggaaaaggcccgcctcatc
gccagcaacatcaccagaaccatgggcctggaaggaggtgatcaccgtgtgttcccatac
agcgtgttctacgtcttctacgaacagtacctgaccatgattgacgacactctctttaac
ctcggtgtgtccctgggtgccatcttcgtggtgaccgtggttctcctgggctgtgagctg
tggtcggcagtgatcatgtgcgtcaccattgctatgatcttggtcaacatgttcggcgtc
atgtggctctggggcatcagtttgaatgcggtttctttggtcaacttggttatgagctgt
ggcatctccgtggagttctgcagccatatcacgagagcgttcacggtgagcacgaaggga
agccgcgtggaacgggcagaagaggcgctctcccgcatgggcagctctgtattcagcgga
atcacactaacgaaatttggaggcattacggttttggccttcgccaaatctcaaattttc
aagagattttacttcaggatgtatttcgctatggtcttactgggagccactcatggatta
atattcctccctgtcttgctcagttacataggaccaccgataaataaagccaaaagtttg
gccgctcaagagcgacacagaggtacagagcgagagcggctcctcaatttctag
DBGET
integrated database retrieval system
