Globicephala melas (long-finned pilot whale): 115847186
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Entry
115847186 CDS
T11080
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04613
Neutrophil extracellular trap formation
gmf05014
Amyotrophic lateral sclerosis
gmf05034
Alcoholism
gmf05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
115847186 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
115847186 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
115847186 (HDAC6)
09165 Substance dependence
05034 Alcoholism
115847186 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmf01009
]
115847186 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115847186 (HDAC6)
04131 Membrane trafficking [BR:
gmf04131
]
115847186 (HDAC6)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115847186 (HDAC6)
Enzymes [BR:
gmf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
115847186 (HDAC6)
Protein phosphatases and associated proteins [BR:
gmf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115847186 (HDAC6)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
115847186 (HDAC6)
Membrane trafficking [BR:
gmf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
115847186 (HDAC6)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
115847186 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
115847186
NCBI-ProteinID:
XP_030702620
LinkDB
All DBs
Position
X:complement(84772560..84791637)
Genome browser
AA seq
1149 aa
AA seq
DB search
MTSTGQDSTTTRQRRSRHNPHPPAHDSSVTSVRPQTSKRGVKKGAVLRSSPNLAEVKKKG
RMKKLSQAAEQDLVVGLQGLDLNREARTLSGTGLVFDEQLNEFHCLWDDSFPEGPERLHA
IKEHLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSV
YLHPNSYTCACLASGSVLRLVDAVLRAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVA
ARYAQQKHDIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLTASNWST
TGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVSLEFQPQLVLVAAGFDALQGDLKG
EMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPVLEFPG
APCPSAQASISCALEALEPFWEVFVRSAETLEEEDTVEGDDVEEKEAEGPWQPPELPILT
WPVLQARTGLVYDPQMMDHYNLWDNHHPETPQRIKRIMHHLEELGLAGRCLALPARPATD
AELLTCHSAEHVDRLRATEKMKTRELHREGASYDSIYICPSTFTCAQLAAGAACRLVEAV
LAGEVLNGIAVVRPPGHHAERDAACGFCFFNSVAVAARHAQAVSGRALRILIVDWDVHHG
NGTQHIFEEDPSVLYISLHRYDHGAFFPMGDEGASSQIGQAAGTGYTVNVAWNGPRLGDA
DYLVAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGSCQVSPEGYAHLTHLLMGLANGR
IILILEGGYNLTSISESMAACTHSLLGDPPPLLTLLRPPLSGALASISETIQVHRRYWCS
LRVTKVKDKEGPSSSKLITKKAPQAANPLSAKGMTMPEGNILEAGTGKATSATSVKESTP
GQTTSETAVMEFTQDQSSETAMGGAAALNQATSEAATGDATLDQTTSEEAVGGAELIQSP
PASCTDNQTPPASPMRGATTQISPSKLTGNLRTLELDKAQEPPEEEELLGEAAGGQDMNE
SVLMHVTGDHADTDQAMFYAVTPLPWCPHLVAVCPVPEAGLDVTQPCQDCGALQENWVCL
SCYQVYCSRYINAHMLQHHEGSGHPLVLSYADLSTWCYHCQAYIHHKALLAVKNIAHQNK
FGENMLHSH
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaggattccaccacaaccagacagcgaaggagtaggcacaatccc
catccccccgcccacgactccagcgtcacctcggtgagaccccagacctcgaagcgaggt
gttaaaaagggtgccgtactccgctccagccccaatctagcggaggtaaagaagaaaggc
agaatgaagaagcttagtcaagcagccgagcaagacctagtcgtggggctgcaagggctg
gatctgaaccgggaggccaggacactgtctggcactggcttggtgttcgatgagcagcta
aatgaattccactgcctctgggatgacagcttccctgaaggccctgagcggctccatgcc
atcaaggagcatctgatccaggagggcctcctggatcgctgtgtgtcctttcaggcccga
tttgccgaaaaggaggagctgatgttggttcacagtctagaatacattgatctgatggag
acgacccagtacatgaatgagggggaactccgtgtcctagcagatacctatgactcagtt
tatctgcatccgaactcatacacctgcgcctgcctggcctcaggctccgtcctcaggctg
gtggatgcagtcctgagggctgagatccggaatggcatggcgatcatcaggcctcctgga
caccatgcccagcacagtctcatggacgggtattgcatgttcaaccacgtggctgtggct
gcccgctatgctcaacagaagcatgacattcagagggtccttatcgtggattgggatgtg
caccacggtcaaggaacacagttcacctttgaccaagaccccagtgtcctctatttctcc
atccaccgctacgagcagggtcggttctggccccaccttacagcctccaactggtccacc
acaggttttggccaaggccagggatacaccatcaatgtgccttggaaccaggtggggatg
cgagatgccgactacatcgccgctttcctgcacgtcctgctgccagtttcccttgagttc
cagccccagctggtcctggtagctgctggatttgatgccctccaaggggacctcaagggc
gagatggccgccactccggcagggttcgcccagctaacccacctgctcatgggtctggca
ggaggcaagctgatcctctcactggagggtggctacaacctccgctccctggctgagggc
gtcagcgcctcgctccacacccttctgggagacccttgccccgtgctggagttccctggc
gccccttgcccgagtgcccaggcgtctatatcctgtgctctggaagcccttgagcccttc
tgggaggtcttcgtgagatcagctgagaccctggaggaggaggacactgtggagggggac
gatgtggaggagaaggaggcggagggaccatggcagccccctgagctcccaatcctgacg
tggccggtgctgcaggctcgcacagggctggtctatgacccacagatgatggatcactac
aacttgtgggacaaccaccaccccgagacgcctcagcgcatcaagcgtatcatgcaccac
ctggaggagttgggtcttgccgggcgctgtctcgccctgcccgcacgtccagccacggac
gctgagctgctcacctgccacagtgctgagcacgtggatcgtctgcgggccacggagaag
atgaagacccgggagctgcaccgcgagggcgccagctatgactccatctacatctgcccc
agcaccttcacctgtgcgcagctggctgctggcgccgcctgccgcctggtggaggctgtg
ctggcaggagaggttttgaatggcattgctgtggtgcgtccccccggccaccatgcagag
cgggatgccgcttgcggtttctgcttcttcaactctgtggctgtggctgctcgccatgcc
caggccgtcagtgggcgtgcgctgcggatcctgatcgtggactgggacgtccatcatggt
aatggaactcagcacatatttgaggaggaccccagcgtgctgtacatttctctgcaccgc
tatgatcatggcgccttctttcctatgggggacgagggcgccagcagccagataggtcag
gctgcaggcacgggctacaccgtcaacgtggcctggaatgggccccgcttgggtgacgcc
gactacctggttgcctggcatcgtctggtgcttcccattgcctatgagtttaacccagaa
ctggtgctggtctcagctggcttcgatgctgcccggggggacccactgggcagctgccag
gtgtcgcctgagggctatgcccacctcacccacctgctgatgggcctggccaatggccgc
attatccttatcctagagggtggttataacctgacatccatctcggagtccatggccgcc
tgcacccactccctccttggggacccgccacccctgctgaccctgctgcggcccccactg
tcaggggccctggcctcgatctccgagaccatccaagtccatcgcagatactggtgcagt
ttgcgggtcacaaaggtcaaagataaagagggaccctccagttctaagttgatcaccaag
aaggcaccccaggcagccaatcctttgtcagccaaggggatgaccatgccagaagggaac
attctggaggcaggcacagggaaggccacctcagcaacatctgtgaaagagtccactcca
ggccagactacgtcagagacagctgtgatggagttcactcaggaccagtcatcagagaca
gccatgggaggagctgctgcgctgaaccaggccacctcagaggcagccacgggggatgcc
acgctggaccagaccacctcggaggaggctgtggggggagctgagctgatccaaagccct
ccagcctcatgcactgacaatcagactcctccagcgtcacccatgcgaggagccacaacc
cagatatcccccagtaaactgactggaaatctcaggaccttggaactagacaaggcacag
gaacccccagaagaggaggagctactaggagaggcagctggaggtcaggacatgaatgag
tcagtactgatgcatgtcactggagaccatgctgacactgaccaagccatgttttatgct
gtaacaccactgccctggtgtccccatttggtggcagtatgccctgtacctgaagcaggc
ctggatgtgacccaaccttgtcaggactgtggagccctccaggagaactgggtgtgtctg
tcttgctaccaggtctactgcagtcgttacatcaatgcccatatgctccaacaccatgaa
ggctcgggacacccgctggtactcagctacgccgacctgtctacctggtgttaccactgt
caggcctacattcatcacaaggctctcctagctgtgaagaacatcgcccaccagaacaag
tttggggagaacatgctccactcacactaa
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