Globicephala melas (long-finned pilot whale): 115847227
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Entry
115847227 CDS
T11080
Symbol
UIMC1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115847227 (UIMC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115847227 (UIMC1)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
115847227 (UIMC1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM
DUF7385
Rad50_zn_hook
zf-WRNIP1_ubi
UIM_2
Motif
Other DBs
NCBI-GeneID:
115847227
NCBI-ProteinID:
XP_060152653
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Position
3:complement(151487950..151677351)
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AA seq
726 aa
AA seq
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MPRRKKKVKEVSEAQNLERKDIETTSPVNVKKKRRLEDAFIVISDSDGEEPKEENGLQKM
KTKQLNRAKCFAKRKIAQMTEEEQFALAVKMSEQEAREVNSQEEEEEELLRKAIAESLNS
CRPSDASVTRSRPLAAGPSSQSHQEKTTDSGTSTGIWQLVPPSLFKGSHISQGNESEERE
EPWDRTENTEEEPVSGSSGSWDQSSQPVFENENVKCFDRCTGHLAERTQCGKPQESTGKG
CAFHKAAQGRGDTSRHCLPTPADAKGLQDIGGTVHYFWGIPFCPAGVDPNQYTKVILCQL
EVYQKSLKMAQRQLLKKKGFGEPVLPRPPSLIQNECGRGDQASEKNERISEDMGDEDKEE
RQESRASVWHSKTKDFQESPIKSLEEKLLLEEEPTTSHGQSSQGLFVEETSEEGSSVPAP
QSIAALNSKRSSVLMPESSAEEITVCPETQLSSPETFDLEKEDFPGSRETVDEVRIMADK
EVLQVDNREDAEKEIPTTTFSSSTQVSCPLCDQGFPPTKIERHAMYCNGLMGQDTVLTRR
QKETKRKSKSDSGTAAQISLDIDKNEKCYLCKSLVPFREYQCHVESCLQLARGDRGDGPE
ESDRVCSAVEGKRPQRLRNPKEKGFSEGRLLSLLEQSEYKTTDAEIKTKFSETGAFRVPS
PGVEEAGCSREIQSSPAHLDLNESPIKSFVSISETTDCLVDFKKQLTVRSSSRTRTKAGR
GRRRKS
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgccacggagaaagaaaaaagttaaagaagtctctgaagctcagaacctggagaggaaa
gatatagaaactaccagtcctgtcaatgtgaagaagaagcgtagacttgaggatgcattc
attgtgatatctgatagtgatggagaggaaccaaaggaggagaatggattgcagaaaatg
aagacaaaacagttgaatagagcaaagtgttttgctaaaagaaaaattgcacaaatgaca
gaagaagaacagtttgctctggctgtcaaaatgagtgaacaggaagctagggaggtgaac
agccaggaggaggaagaagaggagctcttaaggaaagccattgctgaaagcctgaatagt
tgccggccttctgatgcttctgttaccagatctcgacctctggccgctggaccatcttca
cagtcccaccaagagaaaaccacagactctgggacctctacaggcatatggcagctggta
cctccatcactgtttaaaggctcacatatcagtcagggaaacgagtctgaggaaagagag
gagccttgggaccgcactgaaaacactgaagaggagccggtctctggcagctcaggaagc
tgggaccagtcaagccagccagtgtttgagaatgagaacgttaaatgttttgacagatgt
actggccacttggctgagcgcacacagtgtgggaagccacaggaaagtactgggaagggt
tgtgcttttcacaaagctgcccagggtaggggggacacatctaggcactgtttgcctacc
ccagcagatgccaaaggtctccaggacattgggggcactgtgcactacttctggggtatt
ccattctgccctgctggagtagaccctaaccaatataccaaggtcattctctgccagttg
gaggtttatcaaaagagcctgaaaatggctcagaggcagctcttaaaaaaaaaggggttt
ggggaaccagtgttacctagacctccttctctgatccagaatgaatgtggccgaggagat
caggctagtgaaaaaaatgaacgcatctcagaagatatgggagatgaagacaaagaggag
aggcaggagtctagggcatctgtctggcactcaaaaaccaaggatttccaagaaagccca
attaaaagcttggaagagaaacttttgttggaggaagaaccaacaaccagtcatggtcag
tcttcccaagggctgttcgttgaagaaacttctgaagaaggaagttctgtacctgcccca
cagagcattgctgctttgaacagtaagagaagctcagtccttatgccagagagttctgca
gaggaaatcactgtgtgtcctgagacacagctaagttcccctgaaacttttgaccttgaa
aaagaagactttccaggtagcagagagaccgtggatgaagtaagaataatggcagataag
gaggttcttcaggttgataacagggaagatgctgagaaggaaatacctactactaccttc
tcatctagtacccaggtatcctgcccactatgtgaccaaggcttcccacccacaaagatc
gagcgacatgccatgtactgcaatgggctgatgggtcaagatacagtgttgactcggaga
caaaaagagactaagagaaagagcaagagtgacagtgggacagctgctcagatttcccta
gacattgacaagaatgagaagtgttatctctgtaaatccctagtcccattcagagagtat
cagtgtcatgtagagtcctgtctccagcttgcaagaggtgaccgaggagatgggcctgaa
gagagtgatagagtatgctcagctgtggaggggaagcgtccacaacggctgaggaaccca
aaggaaaaaggcttcagtgaaggccgactccttagtctcttggaacagtctgagtacaag
actacagatgcagagataaagaccaagttttcagagacaggagccttcagggtgccttca
ccaggggtagaagaggcaggttgcagcagagagatacagagttctcctgcacatctcgac
ttaaatgagtctcccatcaagtcttttgtttctatttcagaaaccacagattgcttagtg
gactttaaaaagcagcttaccgtccggtcaagtagccggacacggaccaaagcaggcaga
ggaagaaggaggaaatcctga
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