Globicephala melas (long-finned pilot whale): 115847540
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Entry
115847540 CDS
T11080
Symbol
SIGLEC1
Name
(RefSeq) sialoadhesin
KO
K06548
sialoadhesin
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115847540 (SIGLEC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmf04515
]
115847540 (SIGLEC1)
04090 CD molecules [BR:
gmf04090
]
115847540 (SIGLEC1)
04091 Lectins [BR:
gmf04091
]
115847540 (SIGLEC1)
Cell adhesion molecules [BR:
gmf04515
]
Immunoglobulin superfamily
SIGLEC family
115847540 (SIGLEC1)
CD molecules [BR:
gmf04090
]
Proteins
115847540 (SIGLEC1)
Lectins [BR:
gmf04091
]
I-type lectins (Siglecs)
115847540 (SIGLEC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
I-set
ig
V-set
Ig_4
C2-set_2
Ig_5
C1-set
Izumo-Ig
Ig_CD22
C2-set
BiPBP_C
MG2
Motif
Other DBs
NCBI-GeneID:
115847540
NCBI-ProteinID:
XP_060140908
LinkDB
All DBs
Position
15:56458793..56479726
Genome browser
AA seq
1676 aa
AA seq
DB search
MDFPLQLLLLASSIPAGLTSWGVSSPQAVQGVRGSCLVIPCIFSFPASVEVPHGITTIWY
YDYSGNRQVVSHSGDPQLVEARFQGRALLVGRAEHKSCSLLLRDLQPEDAGSYNFRFEIS
EGNRWSDVTGTVVTVTEEPSMPTIASPAELREGMEVDFNCSTPYACLQESVSLQWQGQDP
TRSVTSNLQKLEPTGIIHLETLHMALSWQDHGRTLRCQLSVAKHKTQGEIHLQVQYAPKG
VKILLSPSGRNILPGDLVTLTCQVNNSYPQVSSVQWVKDGTHLKDQSHVLQLPQAAWADA
GIYTCEAGNGVGSSVSPPVSLHVFMAEVQVSPAGSILENQTVTLTCNTPKEAPSELRYRW
YKNHALMEDTHSHILQLRSATRADTGFYFCEVQNAQGSERSGPVSVVVSHPPLAPDLTAF
LETQAGLVGILQCSVVSEPMATLVLSHGGLILASTSGEGDHSPRFSLSSAPNSLHLEIRD
LGPTDSGEYTCSATNSLGNASSTLDFHANAVRLLISPAAEVAEGQAVTLSCRSSLSPTPD
THFSWYRNGAFLLKGPSSSLLLPAASSTDAGSYHCWAQDGHSTSGPSSPAVLTVLYAPRQ
PMFTARLDLDTAGAGAGRRGLLLCRVDSDPPAQLRLLHRDRVVASSLPSGGSCSTCGGCS
QRTKVTRAPNLLRVEIQDPVLEDEGMYLCEASSLLGNASASATFDAQATVLVITPSHTLQ
EGTGANLTCRVDREAGGPANFSWFRDGALWAQGPLETLTLLPVTRRDAALYACRILTEAG
AQLSTPVVLTVLYPPDPPKLSALLDVDQGHTAVFICTVDSRPLAQLSLFHGEHLLATSSG
PQLSSRGHLQAKATANSLQLEVQDLSLADSGSYRCEATNVLGSANTSLFFQVRGAWVRVS
PSPELREGQAVVLSCQVPTGVLEGTSYRWYRDGQPLQEFTSATVHFAAITLSKAGAYHCQ
AQAPGSATTNLAVPVSLHVSYAPRQATLIPLMDTGPGRLGLLLCRVNSDPPAQLRLLHGD
LLVASTLQGVGELAGSSPRLQVAVAPNMLRLEIHNAVLEDEGVYTCEATNALGQASASAT
FDAQAVSVQVWPKATVQEGQLVNLTCLVWATHMAQLTYTWYQDGQQRPGAVHSIRLPNVT
VMDAASYRCGVLTPGQALHLSRPVTLDVLYAPRGMRLTYLLESRGGQLALVLCTVDSRPP
AQLALSHAGRLLVSSTTDSVPNTLRLELWEPRPSDEGLYSCSARSPLGQANMSLELRLEG
VQVTLAPSATVPEGAPVTVTCEDPAARPPTHYAWYHNSRWLQEGSAASLSFPMATRAHAG
AYTCQVQDAQGTRSSQPTALHVLYAPRDAILSSFWDSRASPMAVVQCTVDSEPPAELALS
RDGKVLATSHGVHGLAVGTGHVQVARNALRLRVQDVPSGDKDTYVCTARNLLGSISTMGQ
LQAEGVRVVAEPGLDVPEGTALNLSCHLPGSPGPMGNSTFAWFWNGRQLHTDPVPTLAFT
HVALAQAGMYHCRAELPTGATTSAPVMLRVLYPPKTPTMMVFVEPEGGVQGILDCRVDSE
PLASLTIHLGSRLVASSQPQVAPAEPHIHVSATPNALRVDIEELRPGDQGEYVCSASNAL
GSASAATYFGTRALHRLHLFQQLLWVLGLLAGLLFLLLGLGACYAWSSLILVQPHL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggacttcccgctccagctcctcctcctggcctcatccatcccagcaggcctgacctca
tggggcgtctccagtccccaggctgtgcagggcgtaaggggttcctgcctcgtcatcccc
tgcatcttcagcttccctgccagcgtggaggtgccccacggcatcacaaccatctggtac
tatgactactcgggcaaccggcaggtagtgagccattccggggacccccagctggtggag
gcccgtttccaaggccgtgccctactggtggggcgtgccgagcacaagtcgtgcagcctg
ctgctgagagacctgcagcccgaggacgcgggctcctacaacttccgctttgagatcagt
gagggcaaccgctggtcagatgtcacaggcacagtggtcaccgtgacagaggagcccagc
atgcccaccattgcctcaccagctgagctgcgcgagggcatggaggtggacttcaactgc
tccactccctacgcgtgcctgcaggagtcagtcagtctgcagtggcaaggccaggacccc
acccgctccgtcacctccaacctccagaagcttgagcccacaggcatcatccacctggag
accctccacatggccctgtcctggcaggaccatggccggaccctgcgctgccagctctcg
gtggccaaacacaagactcagggcgagattcacctccaagtgcagtatgcccccaagggt
gtgaagatcctcctcagcccttcggggcgaaacatccttccaggtgatctggtcacactc
acctgccaggtgaataacagctaccctcaggtcagttccgtgcagtgggtcaaggatggg
acgcacctcaaagaccagagtcatgtactacagctgccccaggcagcctgggccgatgct
ggcatctacacctgtgaagctgggaatggcgtgggctcttcggtctcaccccctgtcagc
ctccacgtcttcatggctgaggtccaggtgagcccagcaggctccatcctggagaaccag
acagtgacgttgacctgcaacacacctaaagaagcgcccagcgagctgcgctacaggtgg
tacaagaaccacgccctgatggaggacactcacagccacatcctccagctgcgctcagcc
accagggctgatacaggcttctacttctgtgaggtgcagaatgcccagggcagcgagcgc
tctggcccggtcagcgtggtggtcagccacccacccctcgccccggacctaactgccttc
ctggagacacaggcaggactggtgggcatcctccagtgctctgtggtcagcgagcccatg
gctactctggtgttgtcacatgggggcctcatcctggcctccacttctggggagggtgac
cacagcccacgcttcagtctctcctctgcccccaactccctgcacctggagattcgagac
ctggggccaactgacagcggagagtacacgtgctcagccaccaactctcttgggaatgcg
tcctccactctggacttccatgccaatgcagtccgcctcctcatcagcccggcagcagag
gtggcagaagggcaagcagtgacactgagctgtaggagcagcctaagcccgacacctgac
acacacttctcctggtaccggaatggggccttccttctcaagggccccagcagcagcctt
ctgctccccgctgcctccagcactgacgccggctcataccactgttgggcccaggatggc
catagcaccagcgggccctcctcacctgctgtccttaccgtcctctatgccccacgccag
cccatgtttaccgcccggctggaccttgatactgcaggagctggggctggacggcgaggc
ctcctcttgtgccgtgtggacagtgatccccccgcccagctgcggctgctccacagggac
cgtgtcgtggcctcttccctgccatccgggggcagctgtagcacctgtgggggctgctcc
caacgcacaaaagtcaccagggcccccaacctgctgcgtgtagagatccaagacccggtg
ctggaagacgagggcatgtacctgtgcgaggccagcagtctcctgggcaatgcctctgcc
tcggcgaccttcgatgcccaggccactgtcctggtcatcacaccatcgcacacgctgcag
gagggcactggagccaatctgacttgcagggtggaccgggaagccggtggccctgccaac
ttctcctggttccgggatggggcactgtgggcccagggccccctggagaccctgacgctg
ctgcctgtgaccagaagggatgctgccctgtatgcctgccgcatcctcaccgaggctggt
gcccagctctccacccctgtggtcctgactgtgctctatcccccagatcctccaaagctg
tcagctctcctggatgtggaccagggccacacggctgtgttcatctgtactgtggacagt
cgccctcttgcccagctgtctctgttccatggggagcacctcctggccaccagctcaggg
ccccagctctcatcccgtggccatctccaggccaaagccacggccaactccctgcagcta
gaggtccaagacttgagcctggcggactctggcagctaccgctgtgaggccaccaatgtc
ttgggatcagccaacacttccctcttcttccaggtccgaggagcctgggtccgggtgtca
ccatcgcctgagctccgagagggccaggctgtggtcttgagctgccaggtacccacaggg
gtcctggaggggacctcataccgctggtatcgggatggccagcccctccaggagttcacc
tcggccacagtccattttgcagccataactttgagcaaagctggggcctaccattgccaa
gcccaggctccaggctcagccaccacgaacttggctgtccccgtcagcctccacgtgtcc
tatgcccctcgccaggccacactcatccccctgatggacacaggccctgggcgactgggc
ctcctcctgtgccgtgtgaacagcgaccctccagcccagctacgactgctccacggggac
ctcctcgtggcctctaccctacaaggtgtgggggagcttgcaggcagctctccccggcta
caggtggctgtggcccccaacatgctgcgtctggagatccacaatgcagtgctggaggat
gagggcgtttacacctgcgaggccaccaacgccctgggccaggcctcggcctcagccacc
tttgatgcccaggctgtgagtgtgcaggtgtggcccaaagccaccgtacaggaggggcag
ctggtgaacctgacctgccttgtatgggctacccacatggcccagctcacctatacatgg
taccaagatgggcagcagcgcccaggtgctgtccactccatccgcctgcccaacgtcacg
gtcatggatgctgcctcctaccgctgtggcgtgttgacccctggccaggcactccacctc
tccagacccgtcaccctggacgtcctctatgcaccccgcggcatgcgcctgacctatctc
ctggagagccgcggcgggcagctggccctggtgctgtgcacagtggacagccgcccacct
gcccagctagccctcagccacgctggccgtctcctggtgtcctcgaccacagactctgtc
cccaacaccctgaggctggagctgtgggagcctaggcccagtgatgagggtctctacagc
tgctcggcccgcagtcctctgggtcaggccaacatgtccctggagctgcggctagagggt
gtgcaggtgaccctggctccgtcagccactgtgcccgagggagcccctgtcacagtgact
tgtgaagaccctgctgcccgcccacccacccactatgcctggtaccacaacagtcgttgg
ctgcaggaggggtcagctgcctcgctctcgttcccgatggctacacgggctcatgcgggt
gcctacacctgccaggtccaggatgcccagggcacacgcagctcccagcccacagcgctg
catgtcctctatgcccctcgggacgctatcctgtcctccttctgggactcaagggccagc
cccatggccgtggtacagtgcactgtggacagcgagccacctgccgagctggccctgtcc
cgcgatggcaaggtgctggccaccagccacggggtccacggcttagcagtggggacgggc
cacgtccaggtggcccgcaacgccctgcggctgcgggtgcaagatgtgccctcaggtgac
aaggacacctacgtctgcacggcccgcaacttgttgggctcaatcagcaccatggggcag
ctgcaggcagaaggtgtgcgcgtggtggctgagccagggctggatgtgcctgagggcaca
gcgctgaacctgagttgtcacctccctggcagccctgggcccatggggaactctaccttt
gcttggttctggaatggccggcaactacacacagatcctgtgcccaccctcgccttcact
catgtggccctcgcccaagctgggatgtaccactgccgggctgagctccccactggggcc
accacctctgctccagtcatgctccgggtgctctaccctcccaagacacccaccatgatg
gtttttgtggagcccgagggtggcgtccagggcattctggactgccgagtggacagcgag
cccctagccagcctgaccatccaccttggcagtcggctggtggcctccagccagccccag
gttgctcctgccgagccacacatccacgtctcagccacccctaatgccttgagggtggat
atcgaggagctgaggcctggtgaccagggggaatatgtgtgctctgcctccaatgccctg
ggctctgcctctgctgccacctactttggaaccagagccctgcatcgcctgcatctgttc
cagcagctactctgggtcctggggctgctggcaggcctcctcttcctactgttgggcctg
ggggcctgctacgcctggagctcattgatcctggtgcagccacatttgtga
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integrated database retrieval system
