Globicephala melas (long-finned pilot whale): 115848564
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Entry
115848564 CDS
T11080
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115848564 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115848564 (PATL1)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115848564 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
115848564 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
115848564
NCBI-ProteinID:
XP_030705207
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All DBs
Position
8:10816195..10853066
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AA seq
771 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPRPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDVSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQVLCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPAPATPPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHP
QHRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMV
QLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHAYKPVQFE
GSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDY
ERRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVAR
ILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQL
MNLPQSAAAPAPSNPHLTAVLQNKFGLSLLLLVLSRGEDLQGSDPTSESTQSNQWTEVMF
LATRELLRIPQAALAKPVSIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggcctgggagaggaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgaattggaagaaaagcta
cccgtggcggttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gatcatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtacagaccaggccagtgttgcaaccccgaccaggaagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactgctt
gctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgggacgtttctgagcgtgcattaccgaggcggtcaacttcgcct
atcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagatggct
gtacccagcttcaaccaacaggttctgtgtccgaagcctgtccatgttcgacccccaatg
ccaccacgctatcctgctccctacggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctactgggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcgcagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccacttgctgccatgaatcccaagttg
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccagcccctgctacaccgcctcctcctcagcagcaccctcctggcccagggcctcac
ctgcaaaacctaagatcacaggccccaatgtttagaccagacacaacccaccttcatcca
cagcaccgtcgactcttgcatcagagacagcaacagaataggaatcagcatcggaatctc
aatggcgcaggagatagaggaagtcaccggagcagtcatcaggatcatctccgaaaggat
ccatatgccaatctcatgttgcagcgagaaaaggattgggtctctaaaatccagatggtg
cagctgcaaagcactgatccctacctggatgatttttattaccagaattattttgaaaaa
ctggagaaactgtcagctgctgaagaagtgcaaggtgatggcccaaaaaaggagcgcacc
aagctcattacccctcaggtggccaaactggagcacgcctataagccagtgcagtttgag
ggctctttgggaaagcttactgtctctagtgtgaataatccccgaaaaatgattgatgct
gttgtgacatctcggagtgaggatgatgagacaaaagaaaaacaggttcgggacaaaaga
cgaaaaacccttgtcataattgagaagacctatagtttactccttgatgtggaggattat
gaaaggcgttacctcctaagtctggaagaagagcgacctgccctgatggatgaaagaaag
cacaaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaggagaggccc
agtgatgaccactttgtacagatcatgtgcatcagaaaagggaagagaatggttgcccgt
attcttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaac
ctccctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttattgagtccc
ttctctcttctcctctatcatcttccatcagtgactgtcaccagccttctgcaacagcta
atgaacctacctcagagtgcagctgcaccagcaccctccaatcctcacctcactgctgtg
ctccagaacaagttcggcctgtcactgctcctcctcgtgctgagccggggggaagacctg
cagggctcagaccccacttcagaatcaacgcagagcaaccagtggacggaggtgatgttc
ctggcaacccgagaacttctgcggattccccaggcagccctggccaagccagtctctata
cccacaaatctagtatccctgttttctcgttacgttgaccgacagaaactgaacttgctg
gagacaaaactgcagctagttcaggggatacgataa
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