Globicephala melas (long-finned pilot whale): 115848616
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Entry
115848616 CDS
T11080
Name
(RefSeq) LOW QUALITY PROTEIN: mitochondrial inner membrane m-AAA protease component AFG3L1-like
KO
K08956
AFG3 family protein [EC:3.4.24.-]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
115848616
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gmf01002
]
115848616
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
gmf03110
]
115848616
Peptidases and inhibitors [BR:
gmf01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
115848616
Chaperones and folding catalysts [BR:
gmf03110
]
Other chaperones and cochaperones
AAA proteases
115848616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
AAA_22
TIP49
AAA_5
AAA_16
RuvB_N
Mg_chelatase
AAA_33
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
115848616
NCBI-ProteinID:
XP_030705289
LinkDB
All DBs
Position
19:62779253..62798473
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AA seq
695 aa
AA seq
DB search
MAAPASSGWALKSGGGDRSAWHPTRAQDHHLLCAFAWTSPHSDSLCDISASWESAFSSWL
CGRDRRQFPSGCVQNHPKVDRLEVVNKQFVGVITAPGTSSEKFVWFNIGSVHTFERNLET
IHWELGIELPEQTAVVYTTESDGSFLRSLVPTFLLIGILLYVARRGPMGAGHGRRGGGLF
TVGETTAKIMKNNVGVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPNGAMLTGP
PGTGKTLLAKATAGEASVPFITVNGSEFLGMFVGVGPARTLRGLLFHVRDVYAMAXINAP
CVLFVEEIDAMGRNCGRGHFGGQSEQENXLNQLLVELDGFSSTTSVMVLAGTHRPDILDL
ALTRPGRFDRQICIGPPDIKGRSSIFRVHLRPLKLDESLSEDALARKLAALTPGFTGADI
SNVCNEAALIATRHLSPFVQEKRLEQAVERVVGGLEKKTQVLQPSEKTTVAYREAGHAVV
GWFLEHADPLLKVSIIPRGKGLGYAQCLPREQYLYTREQLFDRMCAMLGGWVAEQLFFGQ
ITTGAQDDLRKVTQSAYAQIVQFEMSEKLGQVSFDLPWPGKALVEKPYSEATAQLIDQEA
RRLVSSAHTHTLDLLTRSRERVDEVGRRLLGKEVLERAAMVELLGPRPLAEKTAYEELVE
GTGGLEDTSLPQGLKGRCWGPEEGGTECPLQESPA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacctgcttcctcagggtgggcactgaagagcggaggaggtgaccgaagcgcc
tggcacccaaccagggcccaggaccaccaccttctctgcgcctttgcctggacttcccct
cacagtgacagcctttgtgacatcagtgcctcctgggaatccgctttcagcagttggctc
tgtggaagagacagacgtcagtttcccagtggctgtgttcaaaaccacccaaaggtggac
cggctggaagtcgtgaacaaacagtttgtgggtgttattactgcccctgggacatcgtct
gagaagtttgtgtggttcaacatcggcagcgtgcacaccttcgagcgcaacctggagacc
atccactgggaactgggcatcgagctcccggagcagacggccgtggtctacaccaccgag
agcgatgggtctttcttgcgaagcctggtgcccacctttctcctgatcggaatcctcctc
tatgtcgcaaggaggggcccgatgggggctgggcatggcaggagaggagggggcctcttt
accgttggcgagaccacagccaagatcatgaagaacaacgtcggcgtgcgctttgcagac
gtggctggttgcgaagaagccaagttggagatcatggagtttgtgaatttcctgaagaat
cccaagcagtatcaggacctcggggccaaaattccaaacggagccatgctcactggtcct
cctggtaccggcaaaacgcttctcgccaaggcgactgcaggggaggccagcgtgcccttc
atcaccgtgaacgggtccgagttcctgggaatgtttgttggcgtcggtccagctcggacc
ctgcgtggactcctgtttcacgtccgtgacgtgtatgcaatggcctgaataaatgctccc
tgtgtcttgttcgttgaggagattgacgcgatgggcaggaattgcggccgtgggcacttt
gggggccagagcgagcaggagaacnccctgaaccagctgctcgtggagctagacgggttc
agctctaccacgagcgtcatggtgctggcgggcacccaccgccccgacatccttgacctg
gccctgacgcggcccggccggtttgaccgtcagatttgcattggcccccctgacatcaaa
ggcaggtcgtccatcttcagggtccacctgcgtccactcaagttggacgagagcctcagt
gaggacgccctggcgaggaagcttgcggccctcactccaggcttcacaggtgctgatatt
tctaatgtttgcaacgaagcggccctgatcgccacccgccacctgagtccttttgtccag
gagaagcgcttggagcaggcggttgagagggtcgtcggaggtctcgagaagaagacgcag
gtcctacagcccagcgagaagacgacggtggcctaccgtgaggctggccatgcggtggtg
ggctggttcctggagcacgcagaccccctgctcaaggtgtccatcatcccccggggcaag
gggctcgggtatgcccagtgcctgcccagggagcagtacctgtacacgcgggagcagctc
ttcgaccgcatgtgcgccatgctgggtggctgggtggccgagcagctgttcttcgggcag
atcaccacgggggcccaggacgacctgaggaaggtcacccagagtgcctacgcccagatt
gtgcagttcgagatgagcgagaagctgggccaggtgtccttcgacctcccctggcctggc
aaggcactggtggagaagccgtacagcgaggccacggcccagctcatcgaccaggaggct
cggcggctggtcagctctgcgcacacgcacaccctggacctgttgacgcgctcccgggag
cgggtggacgaggtgggcaggcggctgctggggaaggaggtgctggagcgtgccgccatg
gtggagctgcttgggccccgacccttggcggagaagaccgcctacgaggagctcgtggag
ggcaccggtggcctggaggacacgtcccttccccaggggctgaagggccggtgctggggg
ccggaggagggcggcacggagtgccccctgcaggagagcccagcctag
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