Globicephala melas (long-finned pilot whale): 115849058
Help
Entry
115849058 CDS
T11080
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X2
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
115849058 (SHANK1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
115849058
NCBI-ProteinID:
XP_030705792
LinkDB
All DBs
Position
19:6195226..6242356
Genome browser
AA seq
2162 aa
AA seq
DB search
MMTHSPASSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGRGSGGPGSLASVRGLQG
RSMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGL
FQPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTG
LKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAH
IDFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCEL
LLYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNK
ETCARILLYRGADKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAAR
RRGPPGVGLTVPPALLRANSDTSMALPDWMVFAAPGTSSAGAPGPTSGPQGQPQPSAPST
KLSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGG
SLGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGR
IGWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYII
KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG
DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPPQAKRLPP
PTISLRSKSMTSELEELEYEQQVAPVPSVEKKRTVYQMALNKLDEILAAAQQTISASESP
GPGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDERP
YLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGAPFNPGSG
VPHPASSPSSFDGPCPPESRVGSREKSLYHGGALPPVHHPPPPHQPHAPLPQPHHHHAHP
PHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSATPGALSPSHHGSGGGVSGSSQAP
ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPTPSPTSPASPQP
PPAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPETAGGGGGGGGGGSS
APSPAPAMSPVPPPPSPVPAPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTL
FLSTDTGDEEGGESSLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGGGYGGYG
AGSRAYGSSGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESAEGGGAP
QPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGAPPPDPARRELGYRAGLGSQEKSLP
ASPPAARRSLLHRLPPTAPGVGPLLLQLGSEPPAPHPGVSKPWRSAAPEEPERLPLHVRF
LENCQPRAGGAGVRGPPSEDGPGIPPPSPRRSVPPSPTSPRGSDENGLPLLVLPPPAPSV
DVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPTAASPAPPAPPPAVAAAP
PTLDSTASSLTSYDSEVATLTQAGPAAAGDAPPPGPAAPAAPPPPAPQPGPDPPAGTDSG
IEEVDSRSSSDHPLETISSASTLSSLSAEGGAGGGVASVASGPELLDTYVAYLDGQAFGG
SGPPGPPYPPQLMTPSKLRGRALGASGGLRPGPGGGLRDPVTPTSPTVSVTGAGTDGLLA
LSGCSGPSTAGVAGGPGAVEPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPLPGPLAQPQ
ASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGGGGSGDGHHGGASYVPERTSSL
QRQRLSEDSQSSLLSKPVSSLFQNWSKAPLPPLPTGGGGSASAAAAPGATSPSATSSSTS
ARHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPAGPLYPGLFDIRGSP
TGGAGGSADPFAPVFVPPHPGMSGGLGGALSGASRSLSPTRLLSLPPDKPFSAKPLGFWT
KFDVADWLEWLGLSEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFL
ER
NT seq
6489 nt
NT seq
+upstream
nt +downstream
nt
atgatgacccacagccccgcgtcaagcgaggacgaggaacgccacagtgccagcgagtgt
cccgaggggggctcagagtccgacagctccccagacgggcccgggagaggcccccggggg
acccggggccggggcagcgggggacctggtagcctggcctcggttcgaggcctccagggc
cgctccatgtctgtcccagacgacgcccacttcagcatgatggtctttaggattggcatc
cctgacctgcaccagacaaaatgcctgcgcttcaacccagatgccaccatctggacggcc
aagcagcaggtgctctgtgccctgagcgagagcctgcaggatgtcctcaactacggcctg
ttccagccggccacgtcgggccgcgacgccaacttcctggaggaggaacggctgctgcgg
gagtacccccagtcctttgagaagggggtgccctacctggagttccgatacaagacccga
gtttacaaacagaccaacctggatgagaagcagctggccaagttgcacacgaagacgggg
ttgaagaagttcctggagtacgtgcagctcgggacatccgataaggtggcacggctgctg
gacaaggggctggaccccaattaccatgactcggattcaggagagacccccctgacgctg
gctgcccagacagaaggctctgtagaggtgattcgaaccctgtgcctgggcggggcccac
atcgacttccgggcccgggatggcatgacagcgctacacaaggccgcgtgtgcccgtcac
tgcctcgctctcacggcgctcctggatcttgggggttcccccaactacaaggaccgccgg
gggctgactcctctgttccatacggctatggtggggggcgacccccgctgctgtgagctg
ctcctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagatccac
caggcctgccagaggggccattctcagcacctggaacacctgctcttctatggggctgag
cctggagcccagaacgcctcggggaacacggccctgcacatctgcgccctctacaataag
gagacgtgtgctaggatactcctctaccgaggagccgacaaggatgtgaagaataacagc
ggccagacccccttccaggtggcagtgattgctgggaactttgaacttggggagctgatc
cgaaaccatcgagaacaggacgtggtgcccttccaggagtcccccaagtacgcagcccgg
cgacggggaccccccggcgtggggctgacggtgccccccgcgctgctgcgggccaacagc
gataccagcatggccctgcctgactggatggtgttcgccgccccggggacctcgtccgcc
ggggcccccggccctacctcagggccccagggccagccgcagccctcggcccccagcacc
aagctcagcagtgggaccctccgcagtgccagcagcccccggggcgcccgggcccgctcc
ccatcccgagggaggcaccccgaggaggccaagaggcagccccgtggacggcccagctcc
agcgggacaccccgggaagggccagctgggggcaccgggggctccgggggccccgggggc
tccctgggcagccgcgggagacgccggaagctctactcagcggtccccggacgttccttc
atggctgtgaagtcctaccaggcccaagccgagggggagatctccctaagcaagggcgag
aagatcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgc
atcggctggttcccctctgactgcctggaagaggtggccaaccgctcccaggaggcaaag
caagaaagccgaagtgacaaggcaaagagactattccggcattataccgtgggctcctac
gacagctttgatgccccaagcttaatggatgggattggcccagggagtgattacatcatc
aaggagaagacagttctgctgcagaagaaggacagtgaggggtttgggttcgtgctccgg
ggggccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctg
cagtatctggagtcggtggacgagggtggcgtggcatggcgagctggactgcgaatggga
gacttcctcattgaggtgaacgggcagaatgtggtgaaggtcggccaccggcaggtggtg
aacatgatccgccaggggggcaacacgctgatggtcaaggtggtgatggtcaccaggcac
ccggacatggatgaggctgtgcataagaaagcaccgccgcaggctaagcggctcccgcct
ccaaccatctccctgcggtccaagtctatgacctcagagctggaggagctggagtacgag
cagcaagttgcgccggtgcccagcgtggagaaaaagcggaccgtgtatcagatggctctc
aacaaactggatgaaattttggcggccgctcagcagaccatcagtgcaagtgagagtcct
gggcctggtggcctcgcgtccctgggcaaacaccgaccgaagggcttctttgccactgag
tcgagctttgatccccaccaccgctcccagccaagttatgaacgtccttcctacctgcct
ccaggacctgggcttatgctccggcaaaagtctattggggctgcagaagatgagagaccc
tacctagcacccccagccatgaagttcagccgcagcctgtctgtgcctggttcggaggac
atcccgccgccgcccaccacgtccccaccagagcctccctacagcacacctccagccccc
tcttcctccggccgcctcactccctctccccggggagcgcccttcaaccccggctcaggt
gtcccccaccccgcctcgtcaccgtcgtccttcgatgggccctgccctcctgagagccgt
gtagggagccgtgagaagagcttgtaccacggcggggccctgccccctgtgcaccacccg
ccccccccacaccagccgcacgctccgctcccccagccacaccaccaccacgcccacccg
ccgcatcccccggagatggagacaggcggctcccccgatgaccccccaccgcgactggct
ctggggccccagcccagcctgcgaggctggcggggcggcgggcccagcgcgaccccgggg
gccctgtccccgtcgcaccacggcagcgggggcggggttagcggctcctcccaggccccg
gccctgcgctacttccagctgcctccccgggcggccagcgcggccatgtacgtgccggcc
cgttcgggccgcgggcgcaagggcccgctcgtcaagcagaccaaagtcgaaggcgagccc
cagaagggcggcggcctcccgcccacgccctcgcccacgtctccggcgtccccgcagccg
ccgccggccgcggccgccccgtcggaaaagaactccatccccatccccaccatcatcatc
aaggctccatccaccagtagcagcggccgcagcagccagggcagcagcaccgaggcggag
cccccgacccagcccgagaccgcgggcggcggcggagggggcggcggcggcggctcctcc
gcgccgagccccgccccggccatgtcgccagtgccgccgcccccctcgcccgtgcccgcc
cccgcctcgcccagcggcccggccaccctcgacttcaccagccagttcggagcggccctg
gtcggggcggctcggagagaagggggctggcagaacgaagcccgccggcggtctacgctc
ttcctctccaccgacacgggggacgaagagggcggcgagagctcgctgggcccgggggcg
cccccgggcccccggctgcgccactccaaatccatcgatgaaggcatgttttcggccgag
ccctacctccggctggagtccgcaggcgccgggagcggcggcggctacgggggctacgga
gccggcagccgagcctacgggagcagcggaggcagcagcgccttcaccagcttcctgccg
ccgcgccccctggtccacccgctgaccggcaaggccctggacccagcctccccgctcggg
ctggccctggccgcccgagagcgggcgctgaaggagtccgcggagggcggtggggccccc
cagccccctccgaggcccccgtcgccccgctacgaggctccgccgcccacgccgcaccac
cactcgccccacgcccaccacgagccggtgctgcgtctctggggagcccccccgccggac
ccggcgcgccgggagctgggctaccgggccgggctgggcagccaggagaagtcccttccg
gccagcccgccagctgcccgacgctccctgctgcaccgcctgccgcccaccgcccccggg
gtcgggcccctcctgctgcagctggggtccgagccccccgccccgcaccccggggtgagc
aaaccctggaggtccgcagccccggaggagcccgagcggctgcccctccacgtgcggttc
ctcgagaactgccagccccgggccggtggggcgggggtcagggggcccccctcggaggac
gggccggggatcccgccgcccagccctcgccggtccgtgcccccctcgccgacctccccg
cggggcagtgacgagaacgggctccccctgctggtcctgccgccccccgccccctcggtg
gacgtggaagacggcgaatttctctttgtggaaccgctgcccccgcccctggagttctcc
aacagctttgagaagcccgaatcgcccctcacgccggggccgccccacccgctgccggac
ccacccaccgcggccagcccagcgccccctgcgccgccccctgccgtggccgccgcccct
cccacgctggactccaccgcatccagcctgacttcctatgacagcgaggtggccacgctg
acccaggcgggccccgcagctgctggggacgcgcctccgccgggcccagcagccccagcc
gccccgcctccccctgccccacagcctggcccagatcctccagctggcacagattctggt
atcgaggaggtggacagtcggagcagcagtgaccacccgctggagaccatcagcagcgcg
tccacgctgagcagcctgtctgccgaaggcggggctggcggcggggtggccagtgtggcc
agtgggccggagcttctggacacgtatgtggcctacctggacggccaggccttcgggggc
agcggtcctcctggcccaccatacccgccgcagctcatgactccctctaagctccggggc
cgggcgcttggggccagtggaggcctgcggcctggccccggtgggggactccgagaccct
gtcactcccaccagccccaccgtctcggtgacgggggctggaaccgatgggctgctggcc
ctgagtggttgctcaggaccttcgacggcaggtgtggccggcggtccaggggctgtagag
ccagaaggcccaccggtgcccttgccatccgcctcctccctgcctcggaagctgctgccc
tgggaggagggcccgggtccaccaccaccacccctgcctgggcccttagcccagcctcag
gcctcagccttggccacagtaaaagccagcatcatcagtgaactcagctccaagcttcag
cagtttgggggctcctcggcagctggtggcgctctgccctgggcccggggaggcggcggg
ggaagcggggacggccaccacgggggagccagctacgtcccagagaggacttcctccctg
cagcggcagagactctcggaagactcccagtcctcgcttctctccaaacctgtcagcagc
ctgtttcagaactggtccaaagcgcctctgccgcccctccccacaggaggcgggggctcc
gcttcggccgctgcggccccgggggccacctcgccgtcggccacctcctcctccacgtcc
gcccgccacctccagggcgtggagttcgagatgcggccacctttgctccgccgggccccg
agcccgtccctgctgcccgcctcggagcacaaggtcagccccgcgccccggccctcctcc
ctacccatcctgcctgccggaccgctctacccgggcctctttgacatccgcggctccccc
accggaggggcaggaggctcggctgaccccttcgcccctgtctttgtgccaccgcacccc
gggatgtccgggggtctcggcggggccttgtcaggggcctcgcgctccctctcaccgacc
cgcctgctctccctgcccccggacaagccgttcagcgctaaacctctggggttctggacc
aagttcgacgtggccgattggctcgagtggctgggcttgtctgagcaccgagcccggttc
ctggaccacgagatcgatggctcccacctgcccgccttgaccaaggaggactacgtcgat
ctgggggtgaccagggtgggccaccgcatgaacatcgaccgggctctcaaatttttcctg
gagaggtga
DBGET
integrated database retrieval system
