Globicephala melas (long-finned pilot whale): 115849248
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Entry
115849248 CDS
T11080
Symbol
ATG4B
Name
(RefSeq) cysteine protease ATG4B isoform X2
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04136
Autophagy - other
gmf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115849248 (ATG4B)
04136 Autophagy - other
115849248 (ATG4B)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gmf01002
]
115849248 (ATG4B)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmf04131
]
115849248 (ATG4B)
03029 Mitochondrial biogenesis [BR:
gmf03029
]
115849248 (ATG4B)
Peptidases and inhibitors [BR:
gmf01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
115849248 (ATG4B)
Membrane trafficking [BR:
gmf04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
115849248 (ATG4B)
Mitochondrial biogenesis [BR:
gmf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
115849248 (ATG4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
115849248
NCBI-ProteinID:
XP_060157534
LinkDB
All DBs
Position
7:complement(207881..229088)
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AA seq
444 aa
AA seq
DB search
MDAATLTYDTLRFAEFEDFPETSEPLWILGRKYSIFTEKDEILADVASRLWFTYRKNFPA
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTRRTRQPDSYFSVLHEFLDRKD
SCYSIHQIDGGAGRALNSLAWAMSPVLLPGAGRWGGDILRRSLSLWEDASWCQSGARAQA
QMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALAVHVAMDNTVVMEDIRRLCGSSLPC
AGAAALPAGSEPRCNGLPAGPEVASRPSPWRPLVLLVPLRLGLTDINAAYAETLKHCFMM
PQSLGVIGGKPNSARYFIGYVGEELIYLDPHTTQPALQASEHCPIPDESFHCQHPPSRMS
IAELDPSIAVGFFCGTEDDFNDWCQQVKKLSLLGGALPMFELVERQPSHLACPDVLNLSL
DASDVERLERFFDSEDEDFEILSL
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagctactctgacctacgacactctccgatttgctgagtttgaagatttcccc
gaaacctcggagcctctttggatcctgggtcgaaagtacagcatcttcacagaaaaggac
gagatcttggccgatgtggcgtcgagactttggtttacatacaggaagaacttcccggcc
attgggggcaccggccccacctcggacacgggctggggctgcatgctacggtgtggacag
atgatctttgcccaagccctggtgtgccggcacctgggccgagactggaggtggacgcgg
cggacgaggcagccggacagctacttcagcgtcctgcacgagttcctggacaggaaggac
agctgctactccatccaccagatagacggaggtgcgggtagagccctgaactcgctcgcc
tgggccatgtccccagtcctgctgcccggtgcaggtcggtggggaggggacatcttgagg
aggagtctgtccctttgggaggacgcgtcctggtgccagtcaggagctcgtgcccaagca
caaatgggagtcggcgagggcaagtccatcggccagtggtacgggcccaacaccgtcgcc
caggtcctcaagaagctcgccgtcttcgacacgtggagcgccctggccgttcacgtagcg
atggacaacacggtggtgatggaggacatcagaaggttgtgcgggagcagcctgccttgt
gccggggccgcagcgcttcctgcaggttccgagccgcgctgtaacgggctcccggccggc
cctgaggtcgccagcaggccgtcaccatggagaccgctggtgctgctggtcccgctgcgc
ctggggctcacggacatcaatgcggcctacgcggagaccctgaagcactgcttcatgatg
ccccagtccctgggcgtgatcggagggaagcccaacagtgcccgctacttcatcggctac
gtgggtgaggaactcatctacctggaccctcacaccacgcagccagccctgcaggcctct
gagcactgcccgatcccggacgagagcttccactgccagcacccgcccagcaggatgagc
atcgcagagctcgacccgtccatcgccgtgggctttttctgtgggaccgaggacgacttt
aacgactggtgccagcaagtgaaaaagctatccctccttggaggcgcgctgccaatgttt
gagctggtggagcggcagccttcccacttggcctgtcctgacgtcctgaacttgtcctta
gatgcttctgacgtagagcgactggaaagattctttgactcagaagatgaagactttgaa
atcttgtccctttga
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