Globicephala melas (long-finned pilot whale): 115849397
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Entry
115849397 CDS
T11080
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
gmf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115849397 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
115849397 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115849397 (LSM2)
03041 Spliceosome [BR:
gmf03041
]
115849397 (LSM2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115849397 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
115849397 (LSM2)
Spliceosome [BR:
gmf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115849397 (LSM2)
Complex C
U2 snRNP components
115849397 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
115849397
NCBI-ProteinID:
XP_030706448
LinkDB
All DBs
Position
11:79311477..79316972
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctattcctttttcaagtcccttgtgggcaaggatgtggtcgtggaactcaag
aatgacctgagcatctgtggaaccctccattctgtggatcagtatctcaacatcaaacta
actgacatcagtgtcacagaccctgagaaataccctcacatgttatcagtgaagaactgc
ttcattcggggctcagtagttcgctatgtgcagctgccagcagatgaggtcgacacacag
ttgctacaggatgcggcaaggaaggaggccctgcagcagaagcagtga
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