Globicephala melas (long-finned pilot whale): 115849409
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Entry
115849409 CDS
T11080
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03013
Nucleocytoplasmic transport
gmf03015
mRNA surveillance pathway
gmf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115849409 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
115849409 (DDX39B)
03015 mRNA surveillance pathway
115849409 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115849409 (DDX39B)
03041 Spliceosome [BR:
gmf03041
]
115849409 (DDX39B)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115849409 (DDX39B)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115849409 (DDX39B)
Spliceosome [BR:
gmf03041
]
Complex C
Other components
EJC/TREX
115849409 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115849409 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115849409
NCBI-ProteinID:
XP_030706488
LinkDB
All DBs
Position
11:79527432..79538168
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagatgatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccattcacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacggcggtgtttgta
ctggctacactgcaacagctggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgaacgcttctctaaatacatg
cccaacgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaagatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgcccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagctattgccatccaccgtggg
atgcctcaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacatcgccttt
aactacgacatgcctgaggattctgacacatacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttagccatcacgtttgtgtcagatgagaatgatgccaagattctc
aatgatgtgcaggatcgctttgaagtcaacattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
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