Globicephala melas (long-finned pilot whale): 115849417
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Entry
115849417 CDS
T11080
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115849417 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115849417 (SKIC2)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115849417 (SKIC2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115849417 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
115849417 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
115849417
NCBI-ProteinID:
XP_030706518
LinkDB
All DBs
Position
11:complement(79178491..79188440)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERIVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTIADLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRRD
TVSASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRLI
PQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHHLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQTLAELTKRLGALEEPDVTGQLVDLPEYYSYGEELTETRSLIQRRIIESVNGLKSLS
AGRVVIVKNQKHHNALGVILQVSSSSTSRVFTTLVLCDKPMSEDPQERGPASPSVPYPDD
LVGFRLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSAA
VTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg
gccgtagagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatctcctgcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcggccacgacctccttgtctcttcgccggccacccgggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccagggggaatggat
gagcccaccatagcagatctgagcactcgagaggaggctgaggaggagatagactttgag
aaagatcttcttactgttccacccggcttcaagaaaggcgtggactttgcaccagaggat
cacccagccccagcccccggcttgctcagcctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagccaggcggtcccagacgggac
actgtttcagcgtctccctgcagtgctcccctggcccgagcaagcagcttggagaaccta
gtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccccctcag
gagcagtgggccattcctgtggatgtcacctcccctgtcgatgatttctaccgactcatt
ccccagccagccttccggtgggcgtttgagccagatgtgtttcagaaacaggccatccta
cacttggaacggcatgactcggtctttgttgcggctcacacatccgcagggaagacggtt
gtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggatgtg
ggacttctcaccggggacgtgcagctgcacccagaggcctcctgcctcattatgacaaca
gagatccttcgctccatgctatacagtggctcagatgtcatccgagacctggagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgcggagtcgtgtgggaggaggtg
ctcatcatgcttcctgaccacgtctccatcatccttctgagcgctactgtccccaacgcc
cttgaatttgctgactggattgggaggctgaagcgtcgccagatctatgtgatcagcact
gttgctcgcccagtccccctggagcatcatctcttcacggggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgaggcaccttccacacaaaggggtactacgcg
gctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcacaggaccgtggcgtgtacctgtccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcaccttctcccgtggccgctgtgat
gagcaggcctcgggcctcacctcccttgacctcaccacgagttcagagaagagtgagatt
cacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccccag
gttctgcacatgtctgaactcctgcaccgcggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtgtttgactcc
acgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcagatg
gcaggccgggcgggccggaggggcctggaccccacgggcaccgtcatcctgctctgcaag
ggccgtgtgcccgagatggcggacctgcaccgcatgatgatggggaagccgtcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgcaaggacagtaag
gcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcctgat
gtaactggccaactcgttgacctgcctgagtattacagctacggggaggaactgacagag
acccggagcctgatccagcgacgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtgattgtgaagaatcagaagcatcacaacgcactgggtgtgatcctt
caggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataagccc
atgtctgaggacccgcaggagagggggccagcctcccccagtgtgccctacccagatgac
ctcgtgggattcaggctgttcctgcctgaagggccgtgtggccacactgtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggtgctccggctgaatggggagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcggcc
gtgacaactgctgtccaggaactactacgtctggctcaggcccacccagcaggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcggtggtagaggcggggctc
cgggtccggaagctggaggagctgatccggggggctcagtgtgtacacagtccccgtttc
cctgcccagtacctgaagctgcgggagcggatgcagatacaggaggagatggagcggctg
cgcttcctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcgctg
agcgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagcccc
ggggaccctagtgatcagctcccaagcacccttaaacagggggtggaacgtgtccgggct
gtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggagagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcggggacccccgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcggcccgcctggtgggcgagcct
gtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtctttgca
gccagcctctacacccagtga
DBGET
integrated database retrieval system
