Globicephala melas (long-finned pilot whale): 115850287
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Entry
115850287 CDS
T11080
Symbol
RXRB
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X1
KO
K08525
retinoid X receptor beta
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03320
PPAR signaling pathway
gmf04659
Th17 cell differentiation
gmf04919
Thyroid hormone signaling pathway
gmf04920
Adipocytokine signaling pathway
gmf04928
Parathyroid hormone synthesis, secretion and action
gmf05200
Pathways in cancer
gmf05202
Transcriptional misregulation in cancer
gmf05207
Chemical carcinogenesis - receptor activation
gmf05216
Thyroid cancer
gmf05222
Small cell lung cancer
gmf05223
Non-small cell lung cancer
gmf05226
Gastric cancer
gmf05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
115850287 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
115850287 (RXRB)
03320 PPAR signaling pathway
115850287 (RXRB)
04919 Thyroid hormone signaling pathway
115850287 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
115850287 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
115850287 (RXRB)
05202 Transcriptional misregulation in cancer
115850287 (RXRB)
05207 Chemical carcinogenesis - receptor activation
115850287 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
115850287 (RXRB)
05216 Thyroid cancer
115850287 (RXRB)
05222 Small cell lung cancer
115850287 (RXRB)
05223 Non-small cell lung cancer
115850287 (RXRB)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
115850287 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115850287 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gmf03310
]
115850287 (RXRB)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115850287 (RXRB)
Nuclear receptors [BR:
gmf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115850287 (RXRB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
115850287
NCBI-ProteinID:
XP_030707892
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All DBs
Position
11:complement(62853030..62859784)
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AA seq
545 aa
AA seq
DB search
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAVAAGEQQ
TPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGAAPPSPPGPPLPPSAAASLGGSGAP
PPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDV
KPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTY
SCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEM
PVDRILEAELAVEQKSDQGVEGPGGTAGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPH
FSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDR
SLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPGKRRITPVSQDQGSLGASSSSETPKL
PSYPPQPRNLTADKEEPTSADNIPFATPSLKPIVPCFPCQASGEGRVGGAQKGHRVGHTS
TFVLI
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgctcgcccgcccttcctcccccagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggatcccgcagcagcagcggcggcggcggcggtggcagccggagaacaacaa
accccggagccggagccgggggaggctggacgggacgggatgggcgacagcgggcgggac
tcccgaagcccagacagttcctctccaaatccccttccccagggggccgctcccccttct
cctccggggccacccttacccccttcagcagctgcatcccttggaggctctggggctcca
cccccacccccgatgccacccccgccactgggctcccccttcccggtcatcagctcttcc
atggggtcccctggtctgccccctccagctcccccaggattctccgggcctgtcagcagt
ccccagattaactcaacagtgtcgctccctgggggtgggtctggcccccctgaagatgtg
aagccaccagtcttaggggtccggggcctgcactgtccaccccctccaggtggccctggg
gctggcaaacggctatgtgcaatctgcggggaccgaagctcaggcaaacactacggggtt
tacagctgtgagggctgcaaaggcttcttcaagcgcaccatccgtaaggacctgacctac
tcgtgccgggacaacaaggactgcacggtggacaagcgccagcggaaccgctgtcagtac
tgccgctatcagaagtgcctggccaccggcatgaagagggaggcggttcaggaggagcgt
cagcgggggaaggacaaggatggggatggggagggggctgggggagcccccgaggagatg
cccgtggacaggatcctggaggcagagcttgctgtggagcagaagagtgaccagggcgtt
gagggtcctgggggaacggcgggtagcggcagcagcccaaacgatcctgtgactaacatc
tgccaggcagctgacaaacagctcttcacacttgttgagtgggcaaagaggatcccacac
ttttcctccttgcctctggatgaccaggtcatactgctacgggcaggctggaatgagctc
ctcattgcctccttctctcaccgatccatcgatgtccgagacggcatcctcctcgccaca
ggtcttcacgtgcaccgcaactcagcccattccgcaggcgtgggagccatctttgatcgg
tccctctccagggtgctgacagagctagtgtccaaaatgcgtgacatgaggatggacaag
acagaacttggctgcctgagggcaatcattctgttcaatccaggtaagaggaggattacc
cccgtctctcaagaccaaggcagccttggagcctcctcttcttcggagactcctaagtta
cccagctatccccctcaacctagaaatctcacagctgacaaagaagaacccacatctgct
gataacattccctttgcaaccccatccctcaaacccattgtgccctgcttcccttgccag
gcatctggtgaagggcgtgtaggtggggcccaaaagggacatcgtgtgggccacacctcc
acatttgtcctgatttga
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