Globicephala melas (long-finned pilot whale): 115851239
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Entry
115851239 CDS
T11080
Symbol
AFDN
Name
(RefSeq) afadin isoform X9
KO
K05702
afadin
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04014
Ras signaling pathway
gmf04015
Rap1 signaling pathway
gmf04024
cAMP signaling pathway
gmf04517
IgSF CAM signaling
gmf04520
Adherens junction
gmf04530
Tight junction
gmf04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
115851239 (AFDN)
04015 Rap1 signaling pathway
115851239 (AFDN)
04024 cAMP signaling pathway
115851239 (AFDN)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
115851239 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115851239 (AFDN)
04530 Tight junction
115851239 (AFDN)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
115851239 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
115851239
NCBI-ProteinID:
XP_030708797
LinkDB
All DBs
Position
14:86786958..86926395
Genome browser
AA seq
1780 aa
AA seq
DB search
MSAGGRDEERRKLADIIQHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVLETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDIDEKPLVVQLNWNK
DDREGRFVLKNENDAIPAKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEAMRQ
ASDRDDRPFHGDDTENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPKDYCIAR
VVLPPGAQHSDEKAAEEIILDDDECPLQIFREWPNDRGILVFQLKRRPPDYIPKKSQKHM
DGKPLHGKERVDGSGYGAALPPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFD
DGSIQLFGSGIEPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETTMLHSGMKVQFGVS
HVFKFVDPSQDHALPKRSMDGGLMAKGPRQRPGIVQETTFDLGGDVHSGTALPASKSSSR
LDGDRGLSAASTAERGMVKPMVRVEQQLDYRRQESRTQDAPGPDLILPASIEFRESSEDS
FLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQYRPDVSPAERTHKVIAIVNKMVSMM
EGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRITLDAQDVLAHLVQMAF
KYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMSLLRRCRVNAALTIQLF
SQLFHFINMWLFNRLVTDPESGLCSHYWGAIIRQQLGHVEAWAEKQGLELAADCHLSRIV
QATTLLTMDKYAPDDIPNINSTCFKLNSLQLQALLQNYHCAPDEPFVPTDLMEHVVAVAE
NTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLCQRGFCRL
IPHPRSPGTWTIYFEGADYESHLTRENTELAQPLRKEPEVITVTLKKQNGMGLSIVAAKG
AGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL
EVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFELYNNSAQNGSPESPQMP
WAEYSEPKKLPGDDRLMKNRADHRSSPNVANEPPSPGGKGAYTSGTAAKITSVSTGNLCA
EEQTPPPRAEAYPIPTQTYTREYFTFPASKSQDRTAPPQDQWPCYEEKPHMHTDSSHSST
AVQRVTRSQEELREDVAYHLERQRVEAAMERRSDGGDAWLNQGSSLGSSTSSQEHLGPPS
KAGTPASTLTKSGPGRWKTPAASPPVRTDPPPGHYGDGDGVPADSPLPPPPTGAQAAAER
KKREEQQRWYEKEKARLEEERERRRREQERRLGQLRAQAPPPGPPPPGPPSPAAPPAPAR
APDTVIRELQPQQQPRTIERRDLQYITVSREELASGDSLSPDPWKRDAREKLEKQQQLHI
VDLLSREIQELQGKAERSAEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTVL
LMQRLEAERRARLQDEERRRQQQLEEIRTREAEQRARQEEQRARREAEEKRRQEEGYYSR
LEAERRRQHDEAERQLLEPEELGLGRPPLPRGYEPSAPAPPPPPQRTASYLQAQVLSPDA
LYTAKLVAYTEEDDDEDGGPAGPNSYVGSAGTLIGAHDVYRDPREKLSKSQDADVPGGPG
APENLTFRERQRLFSQGHDVSNKVKASRKLTELENELNTK
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaggagcggcggaagctggccgacatcatccagcactgg
aacgccaaccggctggacctgttcgagatcagccagcccaccgaggatttggagttccat
ggagtgatgagattttattttcaagataaagctgctgggaactttgcaacaaaatgtatc
cgggtctctagtaccgccaccactcaggacgtgctggaaacgctcgctgagaaattccgc
cctgacatgcggatgttgtcatcacccaagtactccctgtacgaagtgcatgtcagcgga
gaagaaagaagattggatatagacgagaaaccccttgttgtgcagttgaattggaataag
gatgatcgagagggcagatttgtccttaagaatgagaacgatgccattcctgctaagaag
gctcaaagtaacggacctgaaaagcaggaaaaagaaggtgttatccagaacttcaagaga
actctctcaaagaaagaaaagaaggaaaaaaagaagcgagaaaaagaggcaatgaggcag
gcgtctgatcgagacgatagacctttccatggggatgacaccgaaaattctcgactggct
gctgaggtttacaaagacatgcctgaaactagctttacccgaacgatttctaatcccgag
gtggttatgaaacgacggagacaacaaaaactggaaaagagaatgcaggaatttcggagc
tcagatgggcggcctgattcaggtggaacattgagaatttatgcagatagtttaaaacca
aatattccctacaagacgatcctgctgtctaccacagatcctgcagacttcgctgtggct
gaagctctagagaagtacggtctggagaaagaaaatcctaaggattattgcatcgcccgc
gtggtgcttcctcctggggcccagcattctgatgagaaagctgctgaagaaatcatcctt
gatgacgacgagtgtcctctacagatcttcagggagtggccgaatgacagagggatttta
gtctttcagctgaagaggaggccaccagactacatcccaaagaaaagccagaagcacatg
gatgggaagccgctgcacgggaaggagcgagttgatgggtctggctacggcgctgcactc
ccaccggagaaactgccctacctcgtagagctgagcccagatggttccgactccagagac
aagccaaagctctaccgccttcagctgagtgtcactgaggttgggacagagaagttcgac
gacggctccatccagttgtttggttcaggaattgaaccccatcactgtgacctcacaaac
atggatggagtggtcacggtcacgccgagaagcatggatgccgagacctacgtggacggg
cagcgcatctcggagacgacgatgctgcacagcgggatgaaggtgcagtttggggtgtcc
catgtgtttaagttcgtggaccccagccaggaccacgctctgcccaagagatccatggat
ggaggcctgatggcgaagggtcccagacagaggcctggaattgttcaggagacaactttt
gatttgggaggagatgttcatagtgggacagcattaccagcgagcaagagctcctccagg
ctggacggcgacagggggctgtctgccgccagcaccgccgagcgagggatggtgaagccc
atggtcagagtggaacagcagctggactaccgcaggcaagaaagcagaactcaggacgct
cctgggcctgacctaatactgcctgcaagcattgaattcagggaaagttctgaagattca
tttttatctgccattataaattacactaatagctctacagtccattttaagttgtcacct
acatacgtgttatatatggcgtgtcggtatgtattgtccagccagtacagacccgatgtc
agtcccgcagaacggacgcacaaagtgattgccattgtcaacaagatggtgagcatgatg
gaaggggtcattcaggaagtagaccaggttgatcagaaacagaagaatatcgcaggggcg
cttgctttctggatggcgaatgcatctgagctgctcaacttcataaagcaggaccgagat
ctgagtcgaatcacgctggatgcccaggatgttctagcacacttggttcagatggccttt
aaatacctggttcactgtcttcagtcagaactgaataattacatgccagcctttctggac
gaccccgaagagaacagtctgcagagacccaaaatagacgacgtgctgcacacgctcacg
ggggccatgtcgctgctgcgccgctgccgggtcaacgccgcgctgaccatccagctcttc
tcccagctcttccacttcatcaacatgtggctgttcaacaggctggtgaccgaccccgag
tcggggctgtgctcccactactggggcgccatcatccgccagcagctcgggcacgtggag
gcctgggcggagaagcagggcctggagctggcggccgactgccacctcagcaggatcgtg
caggcaaccactttgctcacgatggataagtacgcacccgatgacatcccaaatataaac
agtacctgcttcaagttaaattcgctgcagcttcaagccttacttcagaactaccactgt
gcacccgatgagccttttgtccctacagacctgatggagcatgtggtggctgtggcggag
aacacggccgacgagctggcacgcagtgacgggcgggaggtgcagctggaggaggacccc
gacctgcagctgccgttccttctgcccgaggacggctactcctgcgacgttgtcagaaac
atcccaaatggcttacaggagtttctggaccctttgtgccagagaggattttgcaggtta
attcctcacccacgctcgccaggcacgtggacgatatattttgaaggtgcagattatgag
agtcaccttacgcgggagaacacggaactggctcagcctctgaggaaagaaccggaagta
atcacggtgaccctcaaaaagcagaacgggatgggcctcagcattgtcgcagcaaagggt
gctggtcaagacaaacttggaatctacgtcaagtctgttgtaaaaggaggtgctgctgac
gtggacgggcggctggctgcaggtgaccagctcctcagcgtggatggacggagtctggta
ggactctctcaagaaagggcagcagaactgatgacaaggacaagctccgtggtgacgctg
gaagtagcaaagcaaggagccatttatcacggtctcgctaccctgctcaatcagccgtca
cccatgatgcagagaatttcagatcgtcgtggatcaggtaaaccccgaccaaagagtgag
ggttttgagctctataacaattcagctcaaaacgggtccccggagagccctcagatgcct
tgggcagaatacagcgaaccaaagaagctgcctggcgacgacaggctgatgaaaaacagg
gctgaccaccgctccagccccaacgtcgcaaatgagccccctagtcccggcgggaaaggc
gcctatacctctgggacagcggccaagataacgtccgtctccactggaaacctctgcgct
gaggagcagacccctcctccccgagccgaggcctaccccatcccgacgcagacctacacc
agggagtacttcaccttcccagcctccaagtcccaggaccgcacggctcctcctcaggac
cagtggccctgttacgaggagaagccccacatgcacacggacagcagccactccagtact
gcagtccagcgcgtgacccggtcccaggaggagctccgggaggatgtcgcgtaccacctg
gagcggcagagggtggaggcggcgatggagcgcaggtctgacggcggcgacgcgtggctc
aaccagggctcctcgctgggctccagcacctccagccaggagcacctgggccccccttcc
aaggcgggcacccccgcgtccacgctcaccaagagcggccctgggcgctggaagacccca
gccgcctccccgccggtgcggaccgacccgccccccgggcactacggcgatggggacgga
gtccccgcggactcgcccctcccgccgcctcccaccggcgcccaggcggctgcagagcgg
aagaagcgggaggagcagcagcgctggtacgagaaggaaaaggcgcgcctggaggaggag
cgcgagcgccggcggcgggagcaagagcgcaggctgggccagcttcgggcgcaggcgccg
ccccccgggcccccgccccccgggccgccctcgcccgccgccccgccggcccccgcccgc
gccccggacaccgtcatccgggagctgcagccccagcagcagccgcgcaccattgagcgc
cgggacttgcagtacatcacggttagcagggaggagctggcctcgggggacagcctgtcc
cccgacccctggaagcgggacgcgcgggagaagctggagaagcagcagcagctgcacatc
gtggacctgctgagccgcgagatccaggagctgcagggcaaggccgagcgctcggccgag
gagagcgaccgcctgcgcaagctcatgctggagtggcagttccagaagcggctgcaggag
tccaagcagaaggacgaggacgacgaggaggaggaggacgacgacgtggacaccgtgctg
ctcatgcagcgcctggaggccgagcgcagagcgcggttgcaggacgaggagcggcggcgg
cagcagcagctggaggagatacggacccgggaggctgagcagcgggcccggcaggaggag
cagcgggccaggcgcgaggccgaagaaaagaggcgacaggaggaggggtattacagccgc
ctggaggccgagcggcgccgacagcacgacgaggccgagcgccagctgctggagcccgag
gagctgggcctgggccgccctccgctcccgcggggctacgagccctcggcccccgcgccc
ccgccgccgccccagcgcaccgcctcctacctgcaggcgcaggtgctctcccccgacgcc
ctgtacaccgccaagctcgtggcttacaccgaggaggacgacgacgaggacggcggcccg
gcaggaccaaactcttacgtgggatctgctggaacactgatcggggcccatgacgtttat
cgcgatccgagagagaaactgtctaaaagccaagacgcggatgtgcctgggggtcctgga
gcccctgaaaacctgacgttcagagagcgccagcgcctcttctcccaaggccacgacgtc
tccaacaaagtgaaagcctctcgcaaattaacggagctggagaacgagctgaacacgaag
tga
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