Globicephala melas (long-finned pilot whale): 115851537
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Entry
115851537 CDS
T11080
Symbol
COL10A1
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
115851537 (COL10A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
115851537
NCBI-ProteinID:
XP_060139423
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Position
14:complement(45192899..45239863)
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AA seq
671 aa
AA seq
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MLPQIALLLLISLNLAHGVFYTDRYQTPTGIKGPPSNTKTQIFIPYTIKSKGISVRGEEG
IPGPPGPAGPRGHPGPSGPPGKPGYGSPGPQGEPGLPGPPGPSATGKPGLPGLPGKPGKR
GPYGPKGDIGPAGLPGLGGPPGPPGIPGPAGISVSGKPGPQGPPGALGPRGFPGEKGAPG
VPGMNGQKGETGYGAPGRPGDRGLPGPQGPMGPPGPPGVGKSGKNGFPGQPGIKGDRGFP
GKRGPTGPPGPQGPPGEQGPEGTGKPGAPGAPGQPGVPGTKGHPGAPGIAGPPGAPGFGK
PGLPGLKGQRGPVGLPGGPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHGIPGP
KGEMGPVGPAGYPGAKGERGSSGLDGKPGYPGEPGLSGPEGNPGLPGPKGDPGIRGRPGL
PGPEGPTGAKGVPGHNGEAGPRGAPGTPGTRGPIGPPGIPGFPGSKGDPGTPGPPGPAGI
ATKGLSGPTGPPGPRGHAGEPGLPGPPGPPGPPGQAVLPEGFVKAGQRPFVGANQGVTGM
PVSAFTVILSKAYPTIGTPIPFDKILYNRQQHYDPRTGIFTCRIPGIYYFSYHVHVKGTH
AWVGLYKNGTPVMYTYDEYIKGYLDQASGSAIIDLTENDQVWLQLPSAESNGLYSSGYVH
SSFSGFLVAPM
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgctgccacaaatagcccttctgctgctaatatccttgaacttggcccatggagtattt
tatactgaccgataccaaacacctacaggcataaaaggcccaccatccaacaccaagaca
cagatcttcatcccttataccataaagagtaaaggtatatcagtaagaggagaggaaggt
attcctggtccaccaggccctgctggacctcgagggcacccaggtccatctggaccacca
ggaaaaccaggctatggaagtcctggaccccaaggagagccagggctgccaggaccgccg
ggaccatcagccactgggaagccaggtctgccaggactcccaggaaaaccagggaagaga
ggaccatacggaccaaagggagatattggaccagctggtttaccaggactagggggcccg
ccagggccacctggaattcccggcccagctggaatttctgtttcaggaaaacctgggcca
cagggacctccaggagccctgggacccaggggctttcctggagaaaagggtgcaccagga
gtccctggtatgaatggacagaaaggggaaacgggatatggtgctcctggccgccctggt
gacaggggcctcccaggtcctcagggtcccatgggaccaccgggcccccctggagtgggg
aaaagcggtaaaaatgggtttccaggacagccaggtatcaaaggtgatcgaggctttcca
ggtaaaagggggccaactggcccaccaggcccccaaggtcctcctggggaacaaggacca
gaaggtactggaaagccaggagcccctggagccccaggccagccaggggttccagggaca
aaaggtcaccctggggctccaggaatagctgggcccccaggggctcctggctttgggaaa
ccaggcttgccaggcctgaaaggacaaaggggacctgtaggccttccggggggtccgggt
gccaaaggggaacaaggcccagcaggtcatcccggggaaccaggtctgactggaccccct
gggaatatgggaccccaaggaccaaaaggcattccaggcaaccatgggatcccaggccct
aaaggtgagatggggccagtcgggcctgcaggataccctggggctaagggagaaaggggc
tcctctgggttagatggaaaacctgggtacccaggagaaccgggtctcagtggtcccgag
ggtaacccagggttgccgggcccaaaaggtgaccctggaattagaggacgtcctggcctc
ccaggccctgagggcccaacaggagctaagggagtgcctgggcacaatggtgaggctggg
ccaagaggtgcccctggaacgccaggtactagaggtcccatcgggccaccaggcattcca
ggattccctggatccaaaggggatccaggaactccgggtcctcctggtccagctggcata
gcaactaaaggtctcagtggacccactgggccaccaggtccaagagggcacgctggagag
cctggcctcccagggcccccaggccccccaggccccccaggccaagcagtcctgccagag
ggctttgtgaaggcaggccagaggccttttgttggtgccaaccagggagtaacaggaatg
cctgtgtctgctttcactgttattctctccaaagcttacccaactataggtactcctatc
ccatttgataaaattttatataacaggcaacagcattatgacccaagaactggaatcttt
acctgtaggattccaggaatatattacttctcctaccacgtgcatgtgaaagggacccat
gcttgggtgggcctgtataagaacggcacccctgtaatgtacacctatgatgagtacatc
aaaggctacctagatcaggcttcagggagcgccataatcgatctcacagaaaacgaccag
gtgtggctccagctgcccagtgcagagtcgaatgggctgtactcctctgggtacgtccac
tcctccttctcaggattcctagtggctccaatgtga
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