Globicephala melas (long-finned pilot whale): 115854032
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Entry
115854032 CDS
T11080
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf01524
Platinum drug resistance
gmf03430
Mismatch repair
gmf05200
Pathways in cancer
gmf05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115854032 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
115854032 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
115854032 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
115854032 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115854032 (MSH2)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115854032 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
115854032
NCBI-ProteinID:
XP_030713599
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All DBs
Position
12:complement(51574629..51647986)
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AA seq
934 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVVKYMGPAGAKTVESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGSKASKENDWYLA
FKASPGNLAQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKKADFSAKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLCAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLISAARELGLDPGKQIKLDSNTQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKD
KQVFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIRAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQEYDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EENIVMKLKQLKAEVIAKNNCFVNEIISRIKVTT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaagagacgctgcagctggagagtgcggccgaggtcggcttcgtg
cgcttcttccagggcatgccggagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctacacggcgcaccgggaggacgcgctgctggccgcccgggaggtgttcaagacc
cagggggtggtcaaatacatgggaccggcaggagcaaagactgtggagagtgttgtactt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaagtaaggcctccaaggagaatgattggtatttggca
tttaaggcttctccaggtaatcttgctcagtttgaagacattctctttggtaacaacgat
atgtcagcttccattggtgttgtgggtgttaaaatgtctacagttgatggccaaagacag
gttggagttgggtatgttgactccatacagaggaagctaggactgtgtgagtttcctgat
aatgatcaattctccaatctggaggctctcctgattcagattggaccaaaggaatgtgtt
ttaccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaaaagctgacttttccgcaaaagatatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacaggtgaatagtgctgtattgccagaa
atggagaatcaggttgcagtttcttcattgtgcgcagtaatcaagtttctagaactctta
tcagatgattcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtcagagcccttaaccttttccagggttccgttgaagatact
actggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctggttaaccaatggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtcgaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttatcgactctatcagggtataaatcaactccctaatgttattcaggct
ctggaaaaatatgaaggaaaacatcaggcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtaaaaccttcatttgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattaataagtgcagct
agagaactaggcttggatcctggcaaacagattaaactggattccaacacacaatttgga
tattattttcgcgtaacatgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
acagtagatatccagaagaatggtgttaaatttacgaacagtaaattgacttctctcaat
gaagagtataccaaaaataaaaccgaatatgaggaagcccaggatgccattgttaaagaa
attgtcaatatttcttcaggctatgtagaaccgatgcagacactaaatgatgtgttagct
cagctagatgctgttgtcagctttgctcacgtgtccaatggagcacctgttccatatgta
cggccggtcattttggagaaaggacaagggagaattatactgaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgttcactttgaaaaagat
aaacaggtgttccacatcattactggtcccaacatgggaggtaaatcaacatatattcgc
cagactggggtggtagttctcatggcccagattgggtgttttgtgccatgtgagtcagca
gaagtgtccatcgtggactgtatcttggcccgggtaggggctggtgacagtcagttgaaa
ggagtctccacattcatggctgaaatgttagaaactgcttctattctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacctatgacggattt
gggttagcgtgggctatatcagagtacattgcaacaaggatccgtgctttttgcatgttt
gcaacccattttcatgaacttactgccttggccaatcagataccaactgttaataatcta
catgtcacagcactaactactgaagagaccttaactatgctttatcaggtgaagaaaggt
gtctgtgatcagagttttgggattcatgttgccgagcttgctaatttccccaggcatgta
atagagtgtgctaaacaaaaagccctggaactagaggaatttcagaatattgggaaacca
caggaatatgatgaaatggaaccagccgcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaagagtttttatccaaggtgaagcaagtgccctttactgaaatgtca
gaagaaaacatcgtaatgaagttaaaacagctgaaagctgaagtgatagcaaagaataat
tgttttgtaaatgaaataatttcaagaataaaggtaactacatga
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