Globicephala melas (long-finned pilot whale): 115854288
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Entry
115854288 CDS
T11080
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04512
ECM-receptor interaction
gmf04514
Cell adhesion molecule (CAM) interaction
gmf04820
Cytoskeleton in muscle cells
gmf05144
Malaria
gmf05205
Proteoglycans in cancer
gmf05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115854288 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
115854288 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115854288 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
115854288 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
115854288 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
115854288 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmf04131
]
115854288 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
gmf04090
]
115854288 (SDC1)
00535 Proteoglycans [BR:
gmf00535
]
115854288 (SDC1)
Membrane trafficking [BR:
gmf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
115854288 (SDC1)
CD molecules [BR:
gmf04090
]
Proteins
115854288 (SDC1)
Proteoglycans [BR:
gmf00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
115854288 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
115854288
NCBI-ProteinID:
XP_030714195
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All DBs
Position
12:75160728..75183211
Genome browser
AA seq
311 aa
AA seq
DB search
MRRPALWLWLCALALRLQPALPQTVAVNVPPEDQDGSGDDSDSFSGSGAGALPDITVSQQ
TPSTWKDKGLLTATPTAPEPSRPDTTVTSTSILPTGEQPEGGGLVLLGELEPGLTAQEKE
ATHPPSGTTLHPTTHRASTARATTAQGPAATSHPHRDVQPDHHETSAPTGHSQLEPQAPS
MEDGASATTEKAAEGEAPTQLPEGEGSGEQDFTFDVSAENSAGATVEPGQRNVPPGDPGA
TGASQGFLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAY
QKPSKQEEFYA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcccggcgctctggctctggctctgcgcgctggcgctgcgcctgcagccggcc
ctcccgcaaactgtggctgtaaacgtgccccccgaggatcaggatggctctggagatgac
tccgacagcttctctggctcgggcgcaggcgctctgccagatatcaccgtgtcacagcag
accccctccacctggaaggacaaggggctcctgacggccacgcccacggctccagagccc
agccgcccggataccacggtcacctccacctccatcctgccgactggagagcagcctgag
gggggcgggctggtgctcctaggagagctggaacctggcctcactgcccaagagaaggag
gccacccacccacccagtgggaccacgctgcacccgaccacccaccgggcatcgacagcc
agagctaccacggcccaggggcctgctgccacctcccatccccacagggacgtgcagcct
gaccaccacgagacctcagctcccacaggtcacagtcagctcgagcctcaggctcccagc
atggaggatggagcttctgctaccaccgagaaggctgctgagggtgaagcccccacccag
ctcccagaaggagagggctctggcgagcaggacttcacctttgacgtgtcggcggagaac
tcagccggggccactgtggaacctggccagcggaatgtgcccccaggggatcccggggcc
acgggggcctcgcagggcttcctggacaggaaggaagtgctgggaggggtcattgccgga
ggcctcgtgggactcatctttgctgtgtgcctggtgggtttcatgctgtaccggatgaag
aagaaggacgagggtagctactccttggaggagccgaagcaagccaatggcggggcctac
cagaagcccagcaaacaggaggagttctatgcctga
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