Globicephala melas (long-finned pilot whale): 115854334
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Entry
115854334 CDS
T11080
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115854334 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmf04121
]
115854334 (TRIM54)
Ubiquitin system [BR:
gmf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115854334 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
DUF349
UvrD_C
PHP
DUF1421
Zn_ribbon_FGT1_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
115854334
NCBI-ProteinID:
XP_060165152
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All DBs
Position
12:complement(69179860..69197333)
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AA seq
364 aa
AA seq
DB search
MNFTVGFKPLLGDAHSMDSLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLNSKA
EQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGISM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFEALCAVLEERKGELLQALALKQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGTMSKVELGG
RPEPGYESMEQFTVNVEHVAEMLRTIDFQPGASGEEEDEEVALDGEEGSAGPEEERLEAS
EGLH
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcacagtgggtttcaagccgctgctaggggatgcacacagcatggacagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaaaccggtggtgatcctg
ccctgccagcacaacctgtgccgcaagtgtgccaatgacgtcttccaggcctcaaaccct
ctgtggcaatcccggggctccaccactgtgtcttcaggaggccgtttccgctgcccgtct
tgcaggcatgaggttgtcctggaccgacatggtgtctacggcctgcagcggaacctgcta
gtggagaacattatcgacatttacaagcaggagtcctcccggccgctgaattccaaggct
gagcagcacctcatgtgcgaggagcatgaagatgagaagatcaatatctactgcctgagc
tgtgaagtgcccacctgctctctctgcaaggtcttcggcgcccacaaggactgtgaggtg
gccccactgcccaccatttacaaacgccagaagagtgagctcagtgatggcatctcgatg
ctggtggcaggcaatgaccgtgtgcaagcagtgatcacacagatggaggaggtgtgccag
accattgaggacaacagccggaggcagaagcagttgctaaaccagaggtttgaggccctg
tgcgcagttctggaggagcgtaagggtgagctgctgcaggcgctggccctgaagcaggag
gagaagctgcagcgcgtcaggggcctcatccgccagtacggagaccacctggaggcctcc
tctaagctggtggagtccgccatccagtccatggaggaaccgcagatggcgctctatctg
cagcaggccaaggagctgatcaataaggtcgggacaatgtcaaaggtggagctgggtgga
cggccggagccgggctatgaaagcatggagcaattcaccgtgaacgtggagcatgtggcc
gaaatgctgaggaccatcgacttccagccaggcgcttctggggaggaagaggatgaggag
gtagcgttggacggggaagagggcagcgcagggccagaggaagagcggctggaggcgtcg
gaaggcctgcactga
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