Globicephala melas (long-finned pilot whale): 115854636
Help
Entry
115854636 CDS
T11080
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf02010
ABC transporters
gmf04148
Efferocytosis
gmf04975
Fat digestion and absorption
gmf04979
Cholesterol metabolism
gmf05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115854636 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115854636 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
115854636 (ABCA1)
04979 Cholesterol metabolism
115854636 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
115854636 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gmf02000
]
115854636 (ABCA1)
Transporters [BR:
gmf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115854636 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
115854636
NCBI-ProteinID:
XP_030714996
LinkDB
All DBs
Position
6:28317081..28454044
Genome browser
AA seq
2262 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSHRDT
SMKNIRQVLRTLYQIERSSSAGLKFQDFLVDNETFSGFLHHNLSLPRPTVDKILGADVSL
RKVFLQGYQLHLTNLCNGSKLGELIQLGDQEVSMLCSLPKEKLDAAEQILHSNLDILKPI
LTELNSTSPFPSKELAEATKALLDSLGIVAQELFSMRSWTDMRQEVMFLTNANSSSSPTQ
IYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSTTPYCNDLM
KNLESSPLSRIIWKALKPLLVGKILYTPDTPVTKQVMAEVNKTFQELAVFHDLEGMWQEL
SPKIWTFMESSPEMDLVRTLLDSRGNDHFWEQRLEGLDWTAKDIVAFLAKHPEEVQSTNG
SVYTWREAFNETNQAIQTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGIVFT
GIAPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV
VEQAIIRVLTGTEKKTGIYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNSILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVF
VFLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFA
SLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPMEEDGFNLTTSVSMMLFDAFLYGVMT
WYTEAVFPGQYGIPRPWYFPCTKSYWFGEEGNEKSQPGFSQKGTSEICMEEEPTHLKLGV
SIQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI
LGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDV
GLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR
HGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSL
SSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVAEARLVED
IGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDA
ETSDGTLPARRNRRVFGDKQSCLRPFTEDDAVDPNDSDIDPESRETDLLSGMDGKGSYQV
KGWKLTQQQFGALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLEL
QPWMYNEQYTFVSNDAPEDVSTQELLSALTGKPGFGTRCMEGNPIPDMPCSVGEEEWSTT
PVPQTITELFRNGNWTMENPSPACQCSSDRIKKMLPVCPLGAGGLPPPQRKQNTADILQN
LTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNSQTLPPSEAVNDAIKQMK
KHLKVAKDSSADRFLSSLGRFMTGLDTKNTVKVWFNNKGWHAISSFLNVINNAILRANLQ
KGENPSEYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQE
RVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLA
LLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNI
NDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVE
GVVFFLITVLIQYRFFIRPRPVKAKLLPLNDEDEDVRRERQRILDGGGQNDILEVKELTK
VYRRKRKPAVDRICIGIPPGECFGLLGVNGAGKSSTFKMLTGDTSVTRGDAFLNKNSILS
NIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEREVGKVGEWAIRKLGLVKYGE
KYAGDYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVL
TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFF
ELAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVN
FAKDQSDDDHLKDLSLHKNQTVVDVALLTSFLQDEKVKESYV
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagctgaggttgctgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctgtttatcttcctgatcctgatc
tccgtgcggctgagctacccaccctatgaacaacatgaatgccactttccaaacaaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaataacccc
tgtttccgttatccgactcctggtgaggctcccggggttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctcggcgacttcttttgtacagccacagagacacc
agcatgaagaacatacgccaagttctaaggacattataccagatcgagcgttccagctca
gcaggcttgaagtttcaggactttctggtagacaatgaaaccttctctggattcctgcat
cacaacctctctctgccaaggccaactgtggacaagatactgggggctgatgtcagtctc
cgcaaggtatttttgcaaggctaccagttacatttgaccaatctgtgcaacggatcaaaa
ttaggagagctgattcaacttggtgaccaagaagtctccatgctttgcagcctgccaaag
gagaaactggatgcagcagagcaaatacttcattccaacctggacattctgaagccgatc
ttgacagaactaaactccacgtctcccttccccagcaaggagctggctgaagccacaaaa
gctttgctggatagtcttgggattgtggctcaagagctcttcagcatgaggagctggact
gacatgcggcaggaggtgatgtttctgaccaacgcgaacagctccagctcccccacccag
atctaccaggccgtgtcccgcatcgtctgcggccatcccgagggtgggggcctgaagata
aagtcccttaactggtatgaggacaacaactacaaagccctctttggaggcaacggcact
gaggacgacgctggcaccttctatgacaattctaccactccttactgcaatgatttgatg
aagaatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcccctgctt
gttgggaagatcctgtatacacctgacactccagtcacaaagcaggttatggctgaggtg
aataagaccttccaggaactggctgtgtttcatgatctggaaggcatgtggcaagagctc
agccccaagatctggaccttcatggagagcagcccagaaatggaccttgtccggacactt
ttggacagcagaggcaatgaccacttttgggaacagcgattggaaggcttagattggaca
gccaaagatatcgtggcatttctggccaagcacccagaggaagtgcagtccactaatggc
tctgtgtacacctggagagaagccttcaatgagaccaaccaggcaatccagaccatctct
cgcttcatggagtgtgtgaacctgaacaagctggaaccagtggcaacagaggttctgctc
atcaacaagtccatggagctactggatgagcggaagttctgggctgggatcgtgttcact
ggaattgctcctggcagtgttgagctgccccatcacgtcaagtacaagatccggatggat
attgacaatgtggagaggacgaataagatcaaggatgggtactgggaccccggtcctcgg
gctgacccctttgaggatatgcggtacgtctgggggggcttcgcgtacttgcaggatgtg
gtggagcaggcaatcatccgggtgctgacgggcacagagaagaaaactggcatctacatg
cagcagatgccttacccctgttacgttgatgacatcttcctgcgggtcatgagccggtca
atgcccctcttcatgacgttggcctggatttactctgtggctgtgatcatcaagggcatc
gtgtacgagaaggaggcgcggctgaaggagaccatgcgcatcatgggcctggacaacagc
atcctgtggttcagctggttcatcagcagcctcatccccctgctcgtgagcgccggcctg
ctggtggtcatcctgaaattaggaaacctgctgccctacagcgaccccagtgtggtgttt
gtctttctgtccgtgttcgccgtggtgaccatcctgcagtgctttctgatcagcacgctc
ttctccagagccaacctggcggcagcctgtggaggcatcatttacttcatgctgtacctg
ccctacgtcctgtgcgtggcatggcaagactacgtgggcttcacactcaagatctttgcg
agcctgctgtctcctgtggcttttgggtttggctgtgagtactttgccctttttgaggag
cagggcattggggtgcaatgggacaacctttttgagagccccatggaggaagatggcttc
aacctcaccacctcggtctccatgatgctgtttgacgccttcctctacggggtgatgacg
tggtacaccgaggctgtgtttccaggccaatatggaatccccaggccctggtatttccct
tgtactaagtcctactggtttggcgaggaaggcaatgagaagagccagcctggtttcagc
cagaagggaacatcagaaatctgcatggaggaggaacccacccacctgaagctgggcgtg
tccattcagaacctgatgaaggtttaccgagatggcatgaaggtggcagttgacggcctg
gccttgaatttctatgagggccagatcacctccttcctgggccacaatggagctgggaag
accaccaccatgtcaatcctgaccgggttgttcccccccacctcgggcactgcctacatc
ctggggaaagacattcgctccgagatgagcaccatccggcagaacctgggggtctgtccc
cagcataacgtgctgtttgacatgctgactgttgaagagcacatctggttttacgcccgc
ctgaaagggctctcggagaagcacgtgaaagcagagatggagcagatggccctggatgtt
ggtttgccgccaagcaaactgaaaagcaaaacaagtcaactgtcaggtggaatgcagaga
aagctgtctgtggccttggcctttgttgggggatccaaggttgtcattctggatgagccc
acagccggcgtggacccttactcccgcaggggaatatgggagctgctgctgaaatatcga
cacggccgcaccattatcctctccacacaccacatggatgaagcggacatcctgggggac
aggattgccatcatttcccatgggaagctgtgctgcgtgggctcctccctgttcctgaag
aaccagctggggacaggttactacctgaccctggtcaagaaggatgtggagtcctccctc
agctcgtgcagaaatagcagtagcactgtgtcgtacctgaaaaaggaggacagtgtttct
cagagcagttctgatgctggcctgggcagtgaccatgaaagtgacacgctgaccatcgat
gtctccgcgatctccaacctcatcaggaagcacgtggccgaggcccggctggtggaagac
attgggcatgagctgacctacgtgctgccctatgaagccgccaaagagggagcctttgtg
gaactcttccatgagattgatgaccggctctcagacctgggcatctccagttatggaatc
tcagagactaccctggaagaaatatttctcaaagtggctgaagagagtggggtggatgct
gagacctcagatggcaccctaccggcaagacgaaacagacgggtcttcggggacaagcag
agctgtcttcgcccatttactgaagatgatgctgttgatccaaatgattccgacatagat
ccagaatccagagaaacagacctgctcagcgggatggacggcaaaggctcctaccaggtg
aagggctggaaactcacacagcagcagtttggggcccttttgtggaagaggctgctgatt
gccaaacggagtcggaagggattctttgctcagattgtcctgccggctgtgtttgtctgc
atcgccctggtgttcagcttgatcgtgccaccctttggcaagtaccccagcctggaactt
cagccctggatgtacaacgaacagtacacatttgtcagtaatgatgctcctgaggacgtg
agcacgcaggaactcttgagcgctctcaccggaaagcctggcttcgggacccgatgtatg
gaaggaaacccaatcccagacatgccctgctcggtgggggaggaggagtggagcaccacc
cccgtgccccagaccatcacggagctcttccgaaacgggaactggacgatggagaacccc
tcccccgcctgccagtgtagcagcgacagaatcaagaagatgctgcccgtgtgtcccctg
ggggctggggggctgcctcctccacagagaaaacagaacactgcggacatccttcagaac
ctgacgggaagaaacatttcggattatctggtgaagacatatgtgcagatcatagccaaa
agcttaaagaacaagatttgggtgaatgagtttaggtacggtggattttccctgggtgcc
agtaattctcaaacacttcctccgagtgaagcagttaatgatgccatcaagcaaatgaag
aaacacttgaaggtggccaaggacagttctgcagatcgatttctcagcagcttgggaagg
ttcatgacaggactggacacgaaaaataccgtcaaggtgtggttcaacaacaagggctgg
cacgccatcagctctttcttgaatgtcatcaacaatgctattctccgggccaacctgcag
aagggagagaaccctagcgaatatgggattactgccttcaatcaccccctgaacctcacc
aagcagcagctctcggaagtggctctgatgaccacatcagtggacgtccttgtgtccatc
tgtgtcatctttgcgatgtccttcgtcccggccagctttgtcgtgttcctgatccaggag
cgagtcagcaaagcgaagcacctgcagttcatcagtggagtgaagcctgtcatctactgg
ctctccaattttgtctgggacatgtgcaactatgtggtccctgccacactggtcatcatc
atcttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgtgctcgcc
cttctactgttgctgtatgggtggtccatcacacctctcatgtacccagcctccttcgtg
ttcaagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggcatc
aatggcagcgtggccacttttgtgctggagctcttcaccaacaataagctgaataacatc
aatgatatcctaaagtcggtgttcttgatcttcccacatttttgcctgggacgggggctc
attgacatggtgaaaaaccaggcaatggcggatgccttggaaaggtttggggagaatcgc
tttgtctcgccgctgtcttgggacttggtgggacgaaacctcttcgccatggccgtggaa
ggggtggtgttcttcctcatcactgtgttgatccagtaccgattcttcatcaggcccaga
cctgtaaaggcaaagcttcttcctctgaatgatgaggatgaagatgtgaggagggagaga
cagagaattcttgatggtggaggacagaatgacatcttggaagtcaaggagctgactaag
gtatatagaaggaagaggaaacctgctgtcgacaggatttgcattggcattcctcctggt
gagtgctttggacttctaggtgtcaatggggctgggaaatcatcaactttcaagatgtta
acgggagataccagtgttaccagaggagatgcttttcttaacaaaaacagtatcttatcg
aacatccacgaagtacatcagaacatgggctattgccctcagttcgatgccatcacagag
ctgctgactggaagagagcacgtggagttctttgcgctcttgagaggcgtcccggagaga
gaagtcggcaaggttggtgagtgggcaattcggaaactgggcctcgtgaagtatggagaa
aaatatgctggggactatagcggaggcaacaagcgcaagctctcgacggccatggctttg
attggcgggcctcctgtggtgtttctggatgaaccgaccacaggcatggaccccaaagcc
cggagattcttgtggaattgtgccttaagtatcatcaaggaagggagatcagtagtgctt
acatctcatagtatggaagaatgtgaagctctttgcactaggatggcaattatggtcaat
gggcggttcaggtgtcttggcagtgtccaacatctgaaaaataggtttggagatggttat
accatagtcgtacgaatagcagggtccaaccctgacctgaagcctgtccaggagttcttt
gaactcgccttcccgggaagcgtgctgaaggagaagcaccggaacatgctgcagtaccag
cttccttcttcactgtcgtccctggccaggattttcagcatcctttcccagagcaaaaag
cgactccacatagaagactactctgtctctcagacaacacttgaccaagtatttgtaaac
tttgccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacacaaaaaccag
acagtagtggatgttgcacttctcacatcttttctgcaggacgagaaagtgaaagaaagt
tatgtatga
DBGET
integrated database retrieval system
