Globicephala melas (long-finned pilot whale): 115855281
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Entry
115855281 CDS
T11080
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X4
KO
K23625
ataxin 2/2L
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf05014
Amyotrophic lateral sclerosis
gmf05017
Spinocerebellar ataxia
gmf05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
115855281 (ATXN2)
05017 Spinocerebellar ataxia
115855281 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
115855281 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115855281 (ATXN2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115855281 (ATXN2)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
115855281
NCBI-ProteinID:
XP_030716193
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All DBs
Position
13:80396343..80523850
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AA seq
1191 aa
AA seq
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MSLKPQQQQQQQQQPAAANARKPGGGGGGGLLTSPAAAPSPSSSSVSSSSAAASSSSSSS
VAAASAGGGRPGLGRGRNSSKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGI
YEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAR
RDAFTDSAISAKVNGEHKEKDLEPWDAGELTTSEELEALENDVSNGWDPNDMFRYNEENY
GVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEE
KYTAVQRNSSEREGHNINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRST
SHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPP
SRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEF
VSHTPPSEATAPPAARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLAS
PQAGIIPAEAVAMPVPAASPTPASPASNRAVTPSLEAKDSRLQDQRQTSSAGNKENMKPN
ETSPSFSKAESKGISPIVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSR
DLIKDKIEPNAKDSFIENSSNCTSGSSKPSSPSISPSILSNTEHKRGPEVTSQGVQTSSP
GCKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG
HQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQ
DQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSP
VIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGS
LAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQ
QQSAIYHAGLAPTPPSMTPASNTQSPQNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQ
AHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSGEAC
VCRGRRAPQSILLAQVEWQAGPALQAPHLRTSKTRQSVHSRDCDDQFSVRA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagccccagcagcagcagcagcagcagcagcagcccgcggccgccaatgcc
cgcaagcctggcggcggcggcggcggcggcctcctcacgtcgcccgccgccgcgccgtcg
ccgtcctcttcctcagtctcgtcgtcctcggccgcggcttcctcctcctcctcctcctcg
gtggcggcggcgagcgcaggcggcgggcggccgggcctgggcagaggccgaaacagtagc
aaaggactgcctcaatctacgatttcttttgatggaatctatgcaaatatgaggatggtt
catatacttacatcagttgttggatccaaatgtgaagtacaagtgaaaaacggaggtata
tatgaaggagtttttaaaacatacagtcctaagtgtgatttggtacttgatgctgcgcat
gagaaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagtattttg
ttcaagtgttcagattttgttgtggtacagtttaaagatatggactccagttatgcaaga
agagatgcttttactgactctgctatcagtgctaaagtgaatggtgaacacaaagagaag
gacctggagccctgggatgcaggtgaactcactaccagtgaggaactggaggctttggaa
aatgatgtttctaatggatgggatcccaatgatatgtttcgatataatgaagaaaattat
ggtgtagtgtctacatatgatagcagtctatcttcatatacggtgcccttagaaagggat
aactcagaagaatttttaaaacgagaagcaagggcaaaccagttagcagaagaaattgaa
tcaagtgcccagtataaagcccgggtggccctggaaaatgatgataggagcgaagaagaa
aaatacacagcagttcagagaaattccagtgaacgtgagggccacaacataaacactagg
gaaaataaatatattcctcctggacaaagaaatagagaagtcatatcctggggaagtggg
cgacagaattcaccgcgtatgggccagcctggatcgggctccatgccatcgagatccacc
tctcacacttcagatttcaacccaaattctggttcagaccaaagagtagttaatggaggt
gttccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccagtca
ggtcccaactctcttccacctcgggcagccacccctacacggccgccctccaggcccccc
tcgcggccatccagacccccgtctcacccctctgctcatggttctccagctcctgtctct
actatgcctaaacgcatgtcttcagaagggcctccaaggatgtccccaaaggcccagcga
caccctcgaaatcacagagtttctgctgggaggggttccatttccagtggcctagaattt
gtatcccacaccccaccaagtgaagcgactgctcctccagcagcaaggaccagtcccgca
gggggcacgtggtcatcagtggtcagcggggttccaagattatctcctaaaactcacaga
cccaggtctcccagacagaatagtattggaaatactcctagtgggccagttcttgcttct
ccccaagctggtattattccggctgaagctgttgctatgcctgtaccagctgcatctcct
acgcctgccagtcctgcatccaacagagctgtaaccccgtctcttgaggctaaagattcc
aggcttcaggatcagaggcagacctcttctgcagggaataaagaaaatatgaagcccaat
gagacatcacctagcttctcaaaagctgaaagtaaaggtatatcaccaattgtttctgaa
catagaaaacagattgatgatttaaagaaatttaagaatgactttaggttacagccaagt
tctacttctgaatctatggatcagctgctaaacaaaaatagagagggagaaaaatcaaga
gatttgatcaaagacaaaattgaaccaaatgctaaggattctttcattgaaaatagcagc
aactgcaccagtggcagcagcaagccgagcagtcccagcatttcaccttcaatcctcagt
aacacggagcacaagaggggacctgaggtcacatcccaaggggttcagacttccagtcca
ggatgtaaacaagagaaagatgataaagaggagaagaaagatgcagctgagcaagtgagg
aaatcaacgttgaatcccaatgcgaaggagttcaaccctcgttccttttctcagccaaag
ccttctaccaccccaacttcgcctcgtcctcaagcacaacctagcccatctatggtgggt
catcagcagccaactccagtttatactcaacctgtttgttttgcaccaaatatgatgtat
ccagtcccagtgagcccaggagtgcaacctttatatcctatacctatgacgcccatgccc
gtcaatcaagccaagacatatagagcaggtaaagtaccaaatatgccccaacaacggcaa
gaccaacatcatcagagtaccatgatgcacccagcctcagcagcaggcccaccaattgtg
gccaccccaccagcttattccacacagtatgttgcctatagtcctcagcagtttccaaat
cagcctcttgttcagcatgtgccacattatcagtctcagcatcctcatgtctatagtcct
gtaatacagggtaatgctagaatgatggcaccaccaacacatgcccagcctggtttagta
tcttcttcagcaactcaatacggggctcatgagcagacgcatgcgatgtatgcatgtccc
aaattaccatacaacaaggagacaagcccttctttctactttgccatttccactggctcc
cttgctcagcagtatgcgcaccctaatgctaccttgcaccctcatactccacatcctcag
ccttctgccacccccactggacagcagcaaagccaacatggtggaagccatcctgcaccc
agtcctgttcagcaccatcagcatcaggccgcccaggctctccacctggccagtccgcag
cagcagtcagccatttaccatgcggggcttgcaccaaccccaccttccatgacacctgcc
tccaatacacagtcgccacagaatagttttccaacagcacaacagaccgtctttacgatt
catccttctcatgttcagccggcttataccaatccaccccacatggcccatgtacctcag
gctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgcta
atgacgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagccc
attccagtctcgacaacagcgcatttcccctatatgacgcacccttcaggtgaggcgtgt
gtgtgcaggggccgccgggcaccccaaagcattctgctcgcacaggtcgaatggcaggcc
gggccagcgcttcaagccccgcatctgagaactagcaagacccgtcagagtgtacacagt
agggactgtgatgatcagttcagtgtcagggcctga
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