Globicephala melas (long-finned pilot whale): 115855981
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Entry
115855981 CDS
T11080
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03030
DNA replication
gmf03420
Nucleotide excision repair
gmf03430
Mismatch repair
gmf03440
Homologous recombination
gmf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115855981 (RPA1)
03420 Nucleotide excision repair
115855981 (RPA1)
03430 Mismatch repair
115855981 (RPA1)
03440 Homologous recombination
115855981 (RPA1)
03460 Fanconi anemia pathway
115855981 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115855981 (RPA1)
03032 DNA replication proteins [BR:
gmf03032
]
115855981 (RPA1)
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115855981 (RPA1)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115855981 (RPA1)
DNA replication proteins [BR:
gmf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115855981 (RPA1)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115855981 (RPA1)
MMR (mismatch excision repair)
115855981 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
115855981 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
115855981
NCBI-ProteinID:
XP_030717703
LinkDB
All DBs
Position
20:7635537..7691879
Genome browser
AA seq
617 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGVTAIKPILQVINIRPIATGNNPPRYRVLMSDGLNTLSSFMLAT
QLNRLVEEEQLSSNCICQVNRFIVNTLKDGRRVIILMELEVLKSGEEVGLKIGNPVPYNE
GQGQQPAVPPPVSAASPPASRPQQQNGSSGVGSTVSKTFGASKTFAKPGGTSLGNSSGAT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGVGDLENKPKDSLVDIIGICKSYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALAGVSISDLKGGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQSAAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EYGRRLITSIRRNAAAM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagttacagcc
ataaaacccattctccaagtcattaacatccgtcccattgctacagggaataatccaccc
cgttatcgagtgcttatgagtgatggattgaatactctgtcttctttcatgttggcaaca
cagttgaaccgtcttgttgaggaagaacaattgtctagcaactgtatttgccaggttaac
cgattcattgtgaacactctgaaggatggaaggagagtgattattttgatggagttagaa
gttttgaaatcaggtgaagaagttggattaaagattggcaatccagtgccctataatgaa
ggacaaggacagcagccagcagttcctcctccagtctcagcagccagtccaccagccagc
aggccccagcaacagaatgggagctcgggagtgggttctactgtatctaagacttttggt
gcctcaaagacatttgcaaaacctggaggtaccagcctagggaacagctccggggcaaca
caggccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaaa
ctcttctctatagaactagttgatgagagtggcgaaatcagagcgactgctttcaacgag
caagcggacaagttctttcctcttattgatgtgaacaaggtctattacttctctaaaggc
accctgaagattgccaacaaacagttcacagccgtcaaaaacgactatgagatgaccttc
aataatgagacttctgtcatgccctgtgaagatggtcatcatttacccacagtccagttt
gatttcacaggggttggtgacctagagaacaagcctaaagactcacttgtagacataatc
ggaatctgcaagagctatgaagatgtcactaaaatcacagtgaagtctaacaacagagaa
gtctctaagaggaatatctatttgatggacatgtcagggaaagtggtgaatgctactctg
tggggagaagatgctgatagatttgatggttctagacaacccgtgatggcgatcaaagga
gccagagtttctgattttggtggacggagcctctctgtactgtcttcgagtaccgtcatt
gtgaaccctgacatcccagaggcctacaagcttcgtggatggtttgactcggaaggacaa
gccttagctggcgtttccatctctgatctaaagggtggaggaataggagggagcaacacc
aactggaaaactttatatgaggttaaatcagagaacttgggccaaggtgacaagcccgac
tattttagctctgtggcaacagtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataagaaagtgattgatcaacagaatggattgtaccgctgc
gagaagtgtgacagtgaatttcccaatttcaagtaccgcatgatcctgtcagtaaatatt
gctgactttcaagagaatcagtgggtcacatgtttccaggagtctgcagaggccatcctt
ggacaaagcgctgcttatcttggggagttaaaagagaagaacgagcaagcgtttgaggaa
gttttccagaatgccaacttcagatcttttacattcaggatcagggtcaagttggagacc
tacaatgatgagtctcgaattaaggccactgtgatggacgtgaagcccgtggactacaga
gaatatggcagaaggctgatcacgagcatcaggagaaacgctgcagcgatgtga
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