Globicephala melas (long-finned pilot whale): 115856319
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Entry
115856319 CDS
T11080
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
115856319 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmf00536
]
115856319 (COL13A1)
Glycosaminoglycan binding proteins [BR:
gmf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115856319 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115856319
NCBI-ProteinID:
XP_060142725
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Position
16:complement(61997377..62141116)
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AA seq
650 aa
AA seq
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MRNGSSTHGGAGRPRRRLQGVTARQGPAGRPGLPGDKGAIGMPGRVGGKGQPGEKGAPGD
AGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGETGPPGQKGEKGQCGEHPHR
LLPLLNSVRLAAPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGPPGLPGPMGPPGL
PGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGTKGAPGIAVAGMKGEPGIPGAKGEKGAA
GAPGLLGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGADGRAGAPGRQGDKG
EPGAAGEQGPAGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP
GIPGQKGEIGLPGPPGHDGEKGPRGKPGDVGPPGPQGPPGKAGPAGLKGEDGLPGNPGKK
GEKGEMGQPGPPGLDGPTGEKGEPGDQGRHGATGLPGPIGLPGFTGEKGEPGEKGDPGVE
VPGPPGPEGPPGPPGLQGIPGPKGEAGLDGAKGEKGIQGEKGDRGPLGLPGASGLDGRPG
PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG
PKGDKGDQGAPGLDAPCPLVCFHLSLGCSGFFLEVCKLETKKANKKMKTK
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatggaagctccactcacggaggcgccgggagaccccgaagacgtctccagggt
gtcactgcccgccagggtcctgctggaagacccggcctcccgggggacaaaggtgccatt
gggatgcctggacgtgtgggaggaaagggccaaccaggcgagaagggagccccaggagat
gccgggatgtccatcatcggtccccgcggccccccgggtcagccgggcactcgaggtttt
cctggatttccgggtcccattgggcttgacggcaaaccgggccgccccggaccaaaaggg
gagacgggacctccaggacaaaaaggagaaaagggtcagtgtggagagcacccacaccgg
ctgctgcctctcctcaattcagtgcggctggctgcacccccagtcattaaaaggcggacc
ttccagggtgaacagggccaggccggcatccaaggcccaccagggccaccaggccctcct
ggaccaagtggacctctggggcccccaggactgccagggcccatggggccacccggctta
cctgggcctcctggaccgaagggagacccggggatccagggctaccacggccggaaggga
gaacggggcatgccagggatgccgggcaaacacggaacaaagggggctcctggaatcgct
gtggccgggatgaagggtgagcctgggatcccaggagccaagggtgagaagggggctgcg
ggcgcccctgggctacttggcctcctagggcagaagggagaaaaaggtgatgccggcaac
tccattggagggggcagaggggagcctgggcccccagggctccctgggcccccagggcca
aagggggaagctggagctgatggccgggcgggcgccccaggacggcaaggagacaagggg
gagcctggagcagctggagaacagggacctgctggccccaagggctccaagggcgaacct
gggaaaggagagatggtggactacaatggaaacatcaacgaggctctccaggagatccgg
acactggccttgatggggccccctggtcttcctgggcagattggcccacctggagctcca
gggatcccaggccagaagggggagattggactgcccggccctcctggacacgatggggaa
aagggacctcgaggcaaaccaggagatgtgggccctcctggtccccaaggccccccagga
aaggctgggcctgcaggactgaagggagaagatggccttccggggaacccaggaaagaag
ggggagaaaggggagatggggcagccaggcccaccgggtctagacggcccaactggggag
aaaggagaaccaggtgaccaagggagacatggagcgaccggattgcctggcccaatcggg
ctcccaggattcacgggagagaaaggagaacccggggagaagggtgacccaggagtggag
gttcctgggccaccagggccagagggacctcccggacctccggggctccaaggcattcct
ggaccaaagggggaagcagggctagatggagcaaaaggagagaagggcatccagggagaa
aaaggagaccgaggtcctctgggattacccggagcttcaggtttggacggcaggcctggg
ccaccgggtactccaggaccaattggagttccaggcccagcgggaccaaagggagagagg
ggcagcaaaggcgaccctgggatgacaggaccaacgggagcagctgggcttcctggttta
cacggaccacccggggacaaaggaaaccggggggagagggggaagaaaggctctagaggg
cctaagggggataagggagaccaaggagcgcctggattagatgccccctgtccattggta
tgtttccatctatcacttggttgttctgggtttttccttgaggtttgcaagctggaaaca
aagaaggcaaataaaaagatgaaaaccaaatga
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